Maxime Descoteaux

Financement

• Subvention. Diffusion MRI-based white matter measures as monitoring biomarkers for clinical trials in Alzheimer’s disease. Alzheimer's Drug Discovery Foundation (New York, États-Unis). 815 393 USD. (2023-2025).
  Numéro de subvention : 21774496. Voir plus
• Subvention. Imaging biomarkers for early identification of mTBI patients at risk for persistent post-concussive symptoms. Canadian Institutes of Health Research (Ottawa, Canada). 1 116 900 $. (2023-2028).
  Numéro de subvention : 202303PJT. Voir plus
• Subvention. Comprendre et identifier les acteurs neurophysiologiques des construits cognitifs chez les enfants d'age scolaire : Une solution grace a l'IRM multimodale et l'intelligence artificielle. Canadian Institutes of Health Research (Ottawa, Canada). 113 333 $. (2023-2026).
  Numéro de subvention : 202211FBD. Voir plus
• Subvention. The long-term consequences of neonatal encephalopathy in the era of therapeutic hypothermia: Identifying child and brain developmental profiles at 9 years of age. Canadian Institutes of Health Research (Ottawa, Canada). 1 082 476 $. (2022-2027).
  Numéro de subvention : 202203PJT. Voir plus
• Subvention. Brain alterations and cognitive decline in obstructive sleep apnea. Canadian Institutes of Health Research (Ottawa, Canada). 658 512 $. (2022-2027).
  Numéro de subvention : 202109PJT. Voir plus
• Subvention. Neurophysiological data acquisition platform for Bishop's University. Canada Foundation for Innovation (Ottawa, Canada). 72 492 $. (2022).
  Numéro de subvention : 42458. Voir plus
• Subvention. Advanced developments of diffusion MRI tractography computational methods. Natural Sciences and Engineering Research Council (Ottawa, Canada). 55 000 $. (2020-2021).
  Numéro de subvention : RGPIN-2020-04818. Voir plus
• Subvention. A new ultra-high resolution 3D digital atlas of the human brain connectome derived from the 3D-PLI dataset and its application to the validation of diffusion MRI fiber tracking. Canadian Institutes of Health Research (Ottawa, Canada). 140 000 $. (2019-2021).
  Numéro de subvention : 201809BPF. Voir plus
• Subvention. AXYOM, construction d'un atlas de la composition des fibres du corps calleux en imagerie par résonance magnétique et tractographie chez le jeune adulte à l'aide de l'apprentissage profond. Fonds de Recherche du Québec – Nature et Technologies (Montreal, Canada). 18 300 $. (2019-2021).
  Numéro de subvention : 278546. Voir plus
• Subvention. Dynamic phenotyping of pathologic mood instability across affective disorders. Canadian Institutes of Health Research (Ottawa, Canada). 219 167 $. (2018-2023).
  Numéro de subvention : 201711MFE. Voir plus
• Subvention. Role of the insula in refractory epilepsy. Canadian Institutes of Health Research (Ottawa, Canada). 616 956 $. (2018-2023).
  Numéro de subvention : 201709PJT. Voir plus
• Subvention. Achieving precision in Image-guided Neurosurgery via an open source collaborative software environment. Canadian Institutes of Health Research (Ottawa, Canada). 672 833 $. (2018-2021).
  Numéro de subvention : 201711CPG. Voir plus
• Subvention. Anatomo-functional connectivity subtypes in age-related neurodegeneration. Canadian Institutes of Health Research (Ottawa, Canada). 135 000 $. (2017-2020).
  Numéro de subvention : 201611MFE. Voir plus
• Subvention. CBRAIN: A national high-performance computing platform for brain research. Canada Foundation for Innovation (Ottawa, Canada). 1 181 339 $. (2016).
  Numéro de subvention : 34862. Voir plus
• Subvention. Towards optimal diffusion MRI tractography and validation. Natural Sciences and Engineering Research Council (Ottawa, Canada). 180 000 $. (2015-2020).
  Numéro de subvention : RGPIN-2015-05297. Voir plus
• Subvention. CBRAIN: Canadian Brain Research And Informatics Platform. Brain Canada Foundation (Montreal, Canada). 2 775 000 $. (2015).
  Numéro de subvention : grant.9458293. Voir plus
• Subvention. Imaging important steps in the formation of brain metastases. Canadian Institutes of Health Research (Ottawa, Canada). 657 269 $. (2012-2018).
  Numéro de subvention : 201203MOP. Voir plus
• Subvention. Chaîne d'analyse optimale pour la tractographie en imagerie de diffusion. Fonds de Recherche du Québec – Nature et Technologies (Montreal, Canada). 60 000 $. (2012-2014).
  Numéro de subvention : 165119. Voir plus
• Subvention. NSERC CREATE Program in Medical Image Analysis. Natural Sciences and Engineering Research Council (Ottawa, Canada). 1 650 000 $. (2012-2018).
  Numéro de subvention : 414043-2012. Voir plus
• Subvention. Dynamic biomarker model in Alzheimer's disease: trajectory analysis and modulating factors. Canadian Institutes of Health Research (Ottawa, Canada). 97 076 $. (2011-2013).
  Numéro de subvention : 201104SEC. Voir plus
• Subvention. Cutting-egde equipment for diffusion magnetic resonance imaging (dMRI) acquisition, reconstruction, analysis and visualization. Canada Foundation for Innovation (Ottawa, Canada). 42 348 $. (2010).
  Numéro de subvention : 26197. Voir plus
• Subvention. A 3 tesla MRI scanner for fundamental and clinical research in oncology, brain function and brain connectivity. Canada Foundation for Innovation (Ottawa, Canada). 800 000 $. (2010).
  Numéro de subvention : 26182. Voir plus
• Subvention. Computational diffusion magnetic resonance imaging: acquisition, modeling, processing and visualization to study brain connectivity and tissue microstructure. Natural Sciences and Engineering Research Council (Ottawa, Canada). 200 000 $. (2010-2015).
  Numéro de subvention : 386741-2010. Voir plus
• Subvention. Métabolisme et écologie du tamia rayé. Natural Sciences and Engineering Research Council (Ottawa, Canada). 4 500 $. (2008-2009).
  Numéro de subvention : grant.2911646. Voir plus
• Subvention. Variational methods and geometric flows for medical analysis. Natural Sciences and Engineering Research Council (Ottawa, Canada). 10 500 $. (2007-2008).
  Numéro de subvention : grant.2807360. Voir plus
• Subvention. Variational methods and geometric flows for medical analysis. Natural Sciences and Engineering Research Council (Ottawa, Canada). 21 000 $. (2006-2007).
  Numéro de subvention : grant.2835283. Voir plus
• Subvention. Variational methods and geometric flows for medical analysis. Natural Sciences and Engineering Research Council (Ottawa, Canada). 21 000 $. (2005-2006).
  Numéro de subvention : grant.2873355. Voir plus
• Subvention. Variational methods and geometric flows for medical analysis. Natural Sciences and Engineering Research Council (Ottawa, Canada). 10 500 $. (2004-2005).
  Numéro de subvention : grant.2843466. Voir plus
• Subvention. Reproducibility of diffusion MRI white matter structural connectome. Mitacs (Vancouver, Canada).
  Numéro de subvention : grant.13968297. Voir plus

Publications

Articles

• Marie-Ève Desjardins, Karine Marcotte, Christophe Bedetti, Bérengère Houzé, Amélie Brisebois, Maxime Descoteaux, Alex Desautels, Simona Maria Brambati. (2026). Longitudinal prediction of naming and connected speech in post-stroke aphasia: Contribution of acute white matter characteristics. Cortex. DOI
• Hall BJ, Aumont E, Hosseini SA, Fernandez Arias J, Boré A, Bezgin G, Trudel L, Chan T, Therriault J, Macedo AC, Woo MS, Oliva-Lopez D, Rahmouni N, Zheng Y, Servaes S, Stevenson J, Gauthier S, Benedet AL, Dumont M, ... Rosa-Neto P. (2026). Association of Cortical Free Water With Brain Tau Tangle Load in the Alzheimer Disease Continuum. Neurology. DOI
• Emmanuelle Renauld, Arnaud Boré, Charles Poirier, Alex Valcourt-Caron, Philippe Karan, Antoine Théberge, Guillaume Théaud, Manon Edde, Philippe Poulin, Gabriel Girard, Jean-Christophe Houde, Anthony Gagnon, Etienne St-Onge, Graham Little, Jon Haitz Legarreta, Stanislas Thoumyre, Gabrielle Grenier, Zineb El Yamani, Mario Ocampo Pineda, ... Maxime Descoteaux. (2026). Tractography analysis with the scilpy toolbox. Aperture Neuro. DOI
• Francis Houde, Russell Butler, Marylie Martel, Maxime Descoteaux, Kevin Whittingstall, Guillaume Leonard. (2026). Evidence of widespread brain inhibition following conventional but not individualised non-motor repetitive transcranial magnetic stimulation: A multimodal study. Brain Research. DOI
• Jeremi Levesque, Antoine Théberge, Maxime Descoteaux, Pierre-Marc Jodoin. (2025). Exploring the robustness of TractOracle methods in RL-based tractography. Medical Image Analysis. DOI
• Descoteaux M, Schilling KG, Aydogan DB, Beaulieu C, Borra E, Chamberland M, Daducci A, Luca A, Dell'Acqua F, Dubois J, Dyrby TB, Farquharson S, Forkel S, Froeling M, Griffa A, Grotheer M, Guevara P, Haber SN, Jangir VK, ... Petit L. (2025). Millennium Pathways for Tractography: 40 grand challenges to shape the future of tractography. ArXiv.
• Marie-Ève Desjardins, Karine Marcotte, Xanthy Lajoie, Christophe Bedetti, Bérengère Houzé, Abdelali Filali-Mouhim, Arnaud Boré, Maxime Descoteaux, François Rheault, Simona Maria Brambati. (2025). Exploring the Relationship Between White Matter Tracts and Resting-State Functional Language Lateralization Index. Neurobiology of Language. DOI
• Paul Bautin, Marc-Antoine Fortier, Monica Sean, Graham Little, Marylie Martel, Maxime Descoteaux, Guillaume Léonard, Pascal Tétreault. (2025). What has brain diffusion magnetic resonance imaging taught us about chronic primary pain: a narrative review. Pain. DOI
• Amélie Darlix, Matthias Preusser, Shawn L Hervey-Jumper, Helen A Shih, Emmanuel Mandonnet, Jennie W Taylor. (2025). Who will benefit from vorasidenib? Review of data from the literature and open questions. Neuro-Oncology Practice. DOI
• Huck, J., Vanderweyen, D., Rundek, T., Elkind, M.S.V., Gutierrez, J., Descoteaux, M., Whittingstall, K. (2025). Accurate and fully automated diameter measurements of Circle of Willis arteries on MRA imaging. Journal of Cerebral Blood Flow and Metabolism. DOI
• Gagnon, A., Gillet, V., Desautels, A.-S., Lepage, J.-F., Baccarelli, A.A., Posner, J., Descoteaux, M., Brunet, M.A., Takser, L. (2025). Beyond discrete classifications: a computational approach to the continuum of cognition and behavior in children. Npj Mental Health Research. DOI
• Labounek, R., Bondy, M.T., Paulson, A.L., Bédard, S., Abramovic, M., Alonso-Ortiz, E., Atcheson, N.T., Barlow, L.R., Barry, R.L., Barth, M., Battiston, M., Büchel, C., Budde, M.D., Callot, V., Combes, A., De Leener, B., Descoteaux, M., de Sousa, P.L., Dostál, M., ... Nestrašil, I. (2025). Body size and intracranial volume interact with the structure of the central nervous system: A multi-center in vivo neuroimaging study. Imaging Neuroscience. DOI
• Jodoin, P.-M., Edde, M., Girard, G., Dumais, F., Theaud, G., Dumont, M., Houde, J.-C., David, Y., Descoteaux, M. (2025). Challenges and best practices when using ComBAT to harmonize diffusion MRI data. Scientific Reports. DOI
• Schilling, K.G., Howard, A.F.D., Grussu, F., Ianus, A., Hansen, B., Barrett, R.L.C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A.F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., ... Jelescu, I.O. (2025). Considerations and recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 3—Ex vivo imaging: Data processing, comparisons with microscopy, and tractography. Magnetic Resonance in Medicine. DOI
• Jelescu, I.O., Grussu, F., Ianus, A., Hansen, B., Barrett, R.L.C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A.F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B.C., ... Schilling, K.G. (2025). Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 1: In vivo small-animal imaging. Magnetic Resonance in Medicine. DOI
• Schilling, K.G., Grussu, F., Ianus, A., Hansen, B., Howard, A.F.D., Barrett, R.L.C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A.F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., ... Jelescu, I.O. (2025). Considerations and recommendations from the ISMRM diffusion study group for preclinical diffusion MRI: Part 2—Ex vivo imaging: Added value and acquisition. Magnetic Resonance in Medicine. DOI
• Karan, P., Edde, M., Gilbert, G., Barakovic, M., Magon, S., Descoteaux, M. (2025). Correction of orientation dependence in magnetization transfer measures in the context of tractometry: Challenges, pitfalls and solutions. Magnetic Resonance Imaging. DOI
• Guberman, G.I., Balasubramaniam, N., Wilson, L., Maes, E.J.P., Chen, J., Luigi, M., Theaud, G., Rheault, F., Bou Assi, E., Zaveri, H.P., Westwick, H., Nguyen, D.K., Bouthillier, A., Bojanowski, M.W., Weil, A.G., Dudley, R.W.R., Bernhardt, B.C., Yuan-Mou Yang, J., Descoteaux, M., ... Obaid, S. (2025). Diffusion MRI Tractography to Reduce Risks of Postoperative Neurologic Deficits: A Systematic Review and Meta-Analysis. Neurology. DOI
• Martinie, O., Karan, P., Simoneau, M., Descoteaux, M., Mercier, C., Robert, M.T. (2025). Feedforward control in children with cerebral palsy and association with white matter integrity. Frontiers in Neurology. DOI
• Valcourt Caron, A., Corbin, N., Boissenin, A., Gupta, A., Nguyen, T.-H., Anandra, S., Miraux, S., Descoteaux, M., Petit, L., Wagner, F.B. (2025). In vivo submillimeter diffusion MRI dataset of 9 macaque brains curated for tractography. Scientific Data. DOI
• Fischer, L., Adams, J.N., Molloy, E.N., Tremblay-Mercier, J., Remz, J., Binette, A.P., Rajah, M.N., Villeneuve, S., Maass, A., Laforce, R., Descoteaux, M., Bocti, C., Vachon-Presseau, E., Tardif, C., Spreng, N., Soucy, J.-P., Schmitz, T., Rosa-Neto, P., Münter, L.-M., ... Poirier, J. (2025). Longitudinal functional connectivity during rest and task is differentially related to Alzheimer’s pathology and episodic memory in older adults. Scientific Reports. DOI
• Therrien-Blanchet, J.-M., Ferland, M.C., Badri, M., Rousseau, M.-A., Merabtine, A., Boucher, E., Hofmann, L.H., Boré, A., Descoteaux, M., Lepage, J.-F., Théoret, H. (2025). Multimodal response-predictor analysis for three non-invasive brain stimulation protocols. Brain Research. DOI
• Karakuzu, A., Blostein, N., Caron, A.V., Boré, A., Rheault, F., Descoteaux, M., Stikov, N. (2025). Rethinking MRI as a measurement device through modular and portable pipelines. Magnetic Resonance Materials in Physics Biology and Medicine. DOI
• Akzam-Ouellette, M.-A., Rouleau, I., Monetta, L., Descoteaux, M., Joubert, S. (2025). Semantic processing in subjective cognitive decline: An eye-tracking study. Neuropsychology. DOI
• Villeneuve, S., Poirier, J., Breitner, J.C.S., Tremblay-Mercier, J., Remz, J., Raoult, J.-M., Yakoub, Y., Gallego-Rudolf, J., Qiu, T., Fajardo Valdez, A., Mohammediyan, B., Javanray, M., Metz, A., Sanami, S., Ourry, V., Wearn, A., Pastor-Bernier, A., Edde, M., Gonneaud, J., ... Pichet Binette, A. (2025). The PREVENT-AD cohort: Accelerating Alzheimer's disease research and treatment in Canada and beyond. Alzheimer S and Dementia. DOI
• Zhang, F., Théberge, A., Jodoin, P.-M., Descoteaux, M., O’Donnell, L.J. (2025). Think deep in the tractography game: deep learning for tractography computing and analysis. Brain Structure and Function. DOI
• Tremblay, C., Rahayel, S., Pastor-Bernier, A., St-Onge, F., Vo, A., Rheault, F., Daneault, V., Morys, F., Rajah, N., Villeneuve, S., Dagher, A., Breitner, J., Baillet, S., Bellec, P., Bohbot, V., Chakravarty, M., Collins, D.L., Etienne, P., Evans, A., ... Weiner, M.W. (2025). Uncovering atrophy progression pattern and mechanisms in individuals at risk of Alzheimer's disease. Brain Communications. DOI
• Alizée Lopez-Persem, Emmanuel Mandonnet, Emmanuelle Volle. (2024). Inside out: the neural basis of spontaneous and creative thinking. Brain. DOI
• Guillaume Herbet, Hugues Duffau, Emmanuel Mandonnet. (2024). Predictors of cognition after glioma surgery: connectotomy, structure-function phenotype, plasticity. Brain. DOI
• Poirier, C., Descoteaux, M. (2024). A unified filtering method for estimating asymmetric orientation distribution functions. Neuroimage. DOI
• Marchi, N.A., Daneault, V., André, C., Martineau-Dussault, M.-È., Baril, A.-A., Thompson, C., Montplaisir, J.Y., Gilbert, D., Lorrain, D., Boré, A., Descoteaux, M., Carrier, J., Gosselin, N. (2024). Altered fornix integrity is associated with sleep apnea-related hypoxemia in mild cognitive impairment. Alzheimer S and Dementia. DOI
• Houde, F., Butler, R., St-Onge, E., Martel, M., Thivierge, V., Descoteaux, M., Whittingstall, K., Leonard, G. (2024). Anatomical measurements and field modeling to assess transcranial magnetic stimulation motor and non-motor effects. Neurophysiologie Clinique. DOI
• Karan, P., Edde, M., Gilbert, G., Barakovic, M., Magon, S., Descoteaux, M. (2024). Characterization of the orientation dependence of magnetization transfer measures in single and crossing-fiber white matter. Magnetic Resonance in Medicine. DOI
• Barbeau, E.B., Badhwar, A., Kousaie, S., Bellec, P., Descoteaux, M., Klein, D., Petrides, M. (2024). Dissection of the Temporofrontal Extreme Capsule Fasciculus Using Diffusion MRI Tractography and Association with Lexical Retrieval. Eneuro. DOI
• Spagnolo, F., Gobbi, S., Zsoldos, E., Edde, M., Weigel, M., Granziera, C., Descoteaux, M., Barakovic, M., Magon, S. (2024). Down-sampling in diffusion MRI: a bundle-specific DTI and NODDI study. Frontiers in Neuroimaging. DOI
• Mandonnet, V., Obaid, S., Descoteaux, M., St-Onge, E., Devaux, B., Levé, C., Froelich, S., Rheault, F., Mandonnet, E. (2024). Electrostimulation of the white matter of the posterior insula and medial operculum: Perception of vibrations, heat, and pain. Pain. DOI
• Hernandez-Gutierrez, E., Coronado-Leija, R., Edde, M., Dumont, M., Houde, J.-C., Barakovic, M., Magon, S., Ramirez-Manzanares, A., Descoteaux, M. (2024). Multi-tensor fixel-based metrics in tractometry: application to multiple sclerosis. Frontiers in Neuroscience. DOI
• Maldonado, I.L., Descoteaux, M., Rheault, F., Zemmoura, I., Benn, A., Margulies, D., Boré, A., Duffau, H., Mandonnet, E. (2024). Multimodal study of multilevel pulvino-temporal connections: a new piece in the puzzle of lexical retrieval networks. Brain. DOI
• Planchuelo-Gómez, Á., Descoteaux, M., Larochelle, H., Hutter, J., Jones, D.K., Tax, C.M.W. (2024). Optimisation of quantitative brain diffusion-relaxation MRI acquisition protocols with physics-informed machine learning. Medical Image Analysis. DOI
• Obaid, S., Guberman, G.I., St-Onge, E., Campbell, E., Edde, M., Lamsam, L., Bouthillier, A., Weil, A.G., Daducci, A., Rheault, F., Nguyen, D.K., Descoteaux, M. (2024). Progressive remodeling of structural networks following surgery for operculo-insular epilepsy. Frontiers in Neurology. DOI
• Qiu, T., Liu, Z.-Q., Rheault, F., Legarreta, J.H., Valcourt Caron, A., St-Onge, F., Strikwerda-Brown, C., Metz, A., Dadar, M., Soucy, J.-P., Pichet Binette, A., Spreng, R.N., Descoteaux, M., Villeneuve, S. (2024). Structural white matter properties and cognitive resilience to tau pathology. Alzheimer S and Dementia. DOI
• da Silva Castanheira, J., Wiesman, A.I., Hansen, J.Y., Misic, B., Baillet, S., Breitner, J., Poirier, J., Bellec, P., Bohbot, V., Chakravarty, M., Collins, L., Etienne, P., Evans, A., Gauthier, S., Hoge, R., Ituria-Medina, Y., Multhaup, G., Münter, L.-M., Rajah, N., ... Vitali, P. (2024). The neurophysiological brain-fingerprint of Parkinson's disease. Ebiomedicine. DOI
• Papadopoulou, A., Pfister, A., Tsagkas, C., Gaetano, L., Sellathurai, S., D'Souza, M., Cerdá-Fuertes, N., Gugleta, K., Descoteaux, M., Chakravarty, M.M., Fuhr, P., Kappos, L., Granziera, C., Magon, S., Sprenger, T., Hardmeier, M. (2024). Visual evoked potentials in multiple sclerosis: P100 latency and visual pathway damage including the lateral geniculate nucleus. Clinical Neurophysiology. DOI
• Monchi, O., Pinilla-Monsalve, G.D., Almgren, H., Ghahremani, M., Kibreab, M., Maarouf, N., Kathol, I., Boré, A., Rheault, F., Descoteaux, M., Ismail, Z. (2024). White Matter Microstructural Underpinnings of Mild Behavioral Impairment in Parkinson's Disease. Movement Disorders. DOI
• Guberman, G.I., Theaud, G., Hawes, S.W., Ptito, A., Descoteaux, M., Hodgins, S. (2024). White matter microstructure, traumatic brain injury, and disruptive behavior disorders in girls and boys. Frontiers in Neuroscience. DOI
• Easson, K., Khairy, M., Rohlicek, C.V., Saint-Martin, C., Gilbert, G., Nguyen, K.-A., Luu, T.M., Couture, É., Nuyt, A.-M., Wintermark, P., Deoni, S.C.L., Descoteaux, M., Brossard-Racine, M. (2023). A comparison of altered white matter microstructure in youth born with congenital heart disease or born preterm. Frontiers in Neurology. DOI
• Bispo, D.D.C., Brandão, P.R.P., Pereira, D.A., Maluf, F.B., Dias, B.A., Paranhos, H.R., von Glehn, F., de Oliveira, A.C.P., Soares, A.A.S.M., Descoteaux, M., Regattieri, N.A.T. (2023). Altered structural connectivity in olfactory disfunction after mild COVID-19 using probabilistic tractography. Scientific Reports. DOI
• Dennis, E.L., Veer, I.M., Descoteaux, M., Tate, D.F., Wilde, E.A. (2023). Editorial: Harmonization strategies and considerations in neuroimaging studies. Frontiers in Neurology. DOI
• Wang, Y.R., Boré, A., Tremblay, J., Descoteaux, M., Champoux, F., Théoret, H. (2023). Exploratory analysis of cortical thickness in low- and high-fit young adults. Neuroreport. DOI
• Dumais, F., Legarreta, J.H., Lemaire, C., Poulin, P., Rheault, F., Petit, L., Barakovic, M., Magon, S., Descoteaux, M., Jodoin, P.-M. (2023). FIESTA: Autoencoders for accurate fiber segmentation in tractography. Neuroimage. DOI
• Edde, M., Theaud, G., Dumont, M., Théberge, A., Valcourt-Caron, A., Gilbert, G., Houde, J.-C., Maltais, L., Rheault, F., Spagnolo, F., Barakovic, M., Magon, S., Descoteaux, M. (2023). High-frequency longitudinal white matter diffusion- and myelin-based MRI database: Reliability and variability. Human Brain Mapping. DOI
• Edde, M., Houde, F., Theaud, G., Dumont, M., Gilbert, G., Houde, J.-C., Maltais, L., Théberge, A., Doumbia, M., Beaudoin, A.-M., Lapointe, E., Barakovic, M., Magon, S., Descoteaux, M. (2023). Impact of follow ups, time interval and study duration in diffusion & myelin MRI clinical study in MS. Neuroimage Clinical. DOI
• Boucher, J., Marcotte, K., Bedetti, C., Houzé, B., Descoteaux, M., Brisebois, A., García, A.O., Rochon, E., Leonard, C., Desautels, A., Brambati, S.M. (2023). Longitudinal evolution of diffusion metrics after left hemisphere ischaemic stroke. Brain Communications. DOI
• Wang, Y.R., Lefebvre, G., Picard, M., Lamoureux-Andrichuk, A., Ferland, M.C., Therrien-Blanchet, J.-M., Boré, A., Tremblay, J., Descoteaux, M., Champoux, F., Théoret, H. (2023). Physiological, Anatomical and Metabolic Correlates of Aerobic Fitness in Human Primary Motor Cortex: A Multimodal Study. Neuroscience. DOI
• Martinie, O., Karan, P., Traverse, E., Mercier, C., Descoteaux, M., Robert, M.T. (2023). The Challenge of Diffusion Magnetic Resonance Imaging in Cerebral Palsy: A Proposed Method to Identify White Matter Pathways. Brain Sciences. DOI
• Barbeau, E.B., Kousaie, S., Brass, K., Descoteaux, M., Petrides, M., Klein, D. (2023). The importance of the dorsal branch of the arcuate fasciculus in phonological working memory. Cerebral Cortex. DOI
• Petit, L., Ali, K.M., Rheault, F., Boré, A., Cremona, S., Corsini, F., De Benedictis, A., Descoteaux, M., Sarubbo, S. (2023). The structural connectivity of the human angular gyrus as revealed by microdissection and diffusion tractography. Brain Structure and Function. DOI
• Girard, G., Rafael-Patiño, J., Truffet, R., Aydogan, D.B., Adluru, N., Nair, V.A., Prabhakaran, V., Bendlin, B.B., Alexander, A.L., Bosticardo, S., Gabusi, I., Ocampo-Pineda, M., Battocchio, M., Piskorova, Z., Bontempi, P., Schiavi, S., Daducci, A., Stafiej, A., Ciupek, D., ... Thiran, J.-P. (2023). Tractography passes the test: Results from the diffusion-simulated connectivity (disco) challenge. Neuroimage. DOI
• Gagnon, A., Grenier, G., Bocti, C., Gillet, V., Lepage, J.-F., Baccarelli, A.A., Posner, J., Descoteaux, M., Takser, L. (2023). White matter microstructural variability linked to differential attentional skills and impulsive behavior in a pediatric population. Cerebral Cortex. DOI
• Easson, K., Khairy, M., Rohlicek, C.V., Gilbert, G., Majnemer, A., Nguyen, K.-A., Luu, T.M., Couture, É., Nuyt, A.-M., Deoni, S.C.L., Descoteaux, M., Brossard-Racine, M. (2023). White matter microstructure is differently associated with executive functioning in youth born with congenital heart disease and youth born preterm. Brain and Behavior. DOI
• Valcourt Caron, A., Shmuel, A., Hao, Z., Descoteaux, M. (2023). versaFlow: a versatile pipeline for resolution adapted diffusion MRI processing and its application to studying the variability of the PRIME-DE database. Frontiers in Neuroinformatics. DOI
• Roy, M., Edde, M., Fortier, M., Croteau, E., Castellano, C.-A., St-Pierre, V., Vandenberghe, C., Rheault, F., Dadar, M., Duchesne, S., Bocti, C., Fulop, T., Cunnane, S.C., Descoteaux, M. (2022). A ketogenic intervention improves dorsal attention network functional and structural connectivity in mild cognitive impairment. Neurobiology of Aging. DOI
• Jarret, J., Boré, A., Bedetti, C., Descoteaux, M., Brambati, S.M. (2022). A methodological scoping review of the integration of fMRI to guide dMRI tractography. What has been done and what can be improved: A 20-year perspective. Journal of Neuroscience Methods. DOI
• Alemán-Gómez, Y., Griffa, A., Houde, J.-C., Najdenovska, E., Magon, S., Cuadra, M.B., Descoteaux, M., Hagmann, P. (2022). A multi-scale probabilistic atlas of the human connectome. Scientific Data. DOI
• Easson, K., Gilbert, G., Rohlicek, C.V., Saint-Martin, C., Descoteaux, M., Deoni, S.C.L., Brossard-Racine, M. (2022). Altered myelination in youth born with congenital heart disease. Human Brain Mapping. DOI
• Radwan, A.M., Sunaert, S., Schilling, K., Descoteaux, M., Landman, B.A., Vandenbulcke, M., Theys, T., Dupont, P., Emsell, L. (2022). An atlas of white matter anatomy, its variability, and reproducibility based on constrained spherical deconvolution of diffusion MRI. Neuroimage. DOI
• Gagnon, A., Descoteaux, M., Bocti, C., Takser, L. (2022). Better characterization of attention and hyperactivity/impulsivity in children with ADHD: The key to understanding the underlying white matter microstructure. Psychiatry Research Neuroimaging. DOI
• Bispo, D.D.D.C., Brandão, P.R.D.P., Pereira, D.A., Maluf, F.B., Dias, B.A., Paranhos, H.R., von Glehn, F., de Oliveira, A.C.P., Regattieri, N.A.T., Silva, L.S., Yasuda, C.L., Soares, A.A.D.S.M., Descoteaux, M. (2022). Brain microstructural changes and fatigue after COVID-19. Frontiers in Neurology. DOI
• Karan, P., Reymbaut, A., Gilbert, G., Descoteaux, M. (2022). Bridging the gap between constrained spherical deconvolution and diffusional variance decomposition via tensor‐valued diffusion MRI. Medical Image Analysis. DOI
• Battocchio, M., Schiavi, S., Descoteaux, M., Daducci, A. (2022). Bundle-o-graphy: improving structural connectivity estimation with adaptive microstructure-informed tractography. Neuroimage. DOI
• Theaud, G., Edde, M., Dumont, M., Zotti, C., Zucchelli, M., Deslauriers-Gauthier, S., Deriche, R., Jodoin, P.-M., Descoteaux, M. (2022). DORIS: A diffusion MRI-based 10 tissue class deep learning segmentation algorithm tailored to improve anatomically-constrained tractography. Frontiers in Neuroimaging. DOI
• Yang, Q., Hansen, C.B., Cai, L.Y., Rheault, F., Lee, H.H., Bao, S., Chandio, B.Q., Williams, O., Resnick, S.M., Garyfallidis, E., Anderson, A.W., Descoteaux, M., Schilling, K.G., Landman, B.A. (2022). Learning white matter subject-specific segmentation from structural MRI. Medical Physics. DOI
• Anctil-Robitaille, B., Théberge, A., Jodoin, P.-M., Descoteaux, M., Desrosiers, C., Lombaert, H. (2022). Manifold-aware synthesis of high-resolution diffusion from structural imaging. Frontiers in Neuroimaging. DOI
• Martineau-Dussault, M.-È., André, C., Daneault, V., Baril, A.-A., Gagnon, K., Blais, H., Petit, D., Montplaisir, J.Y., Lorrain, D., Bastien, C., Hudon, C., Descoteaux, M., Boré, A., Theaud, G., Thompson, C., Legault, J., Martinez Villar, G.E., Lafrenière, A., Lafond, C., ... Gosselin, N. (2022). Medial temporal lobe and obstructive sleep apnea: Effect of sex, age, cognitive status and free-water. Neuroimage Clinical. DOI
• Mrah, S., Descoteaux, M., Wager, M., Boré, A., Rheault, F., Thirion, B., Mandonnet, E. (2022). Network-level prediction of set-shifting deterioration after lower-grade glioma resection. Journal of Neurosurgery. DOI
• Schilling, K.G., Tax, C.M.W., Rheault, F., Landman, B.A., Anderson, A.W., Descoteaux, M., Petit, L. (2022). Prevalence of white matter pathways coming into a single white matter voxel orientation: The bottleneck issue in tractography. Human Brain Mapping. DOI
• Poulin, P., Theaud, G., Rheault, F., St-Onge, E., Bore, A., Renauld, E., de Beaumont, L., Guay, S., Jodoin, P.-M., Descoteaux, M. (2022). TractoInferno - A large-scale, open-source, multi-site database for machine learning dMRI tractography. Scientific Data. DOI
• Rheault, F., Schilling, K.G., Valcourt-Caron, A., Théberge, A., Poirier, C., Grenier, G., Guberman, G.I., Begnoche, J., Legarreta, J.H., Y. Cai, L., Roy, M., Edde, M., Caceres, M.P., Ocampo-Pineda, M., Al-Sharif, N., Karan, P., Bontempi, P., Obaid, S., Bosticardo, S., ... Landman, B.A. (2022). Tractostorm 2: Optimizing tractography dissection reproducibility with segmentation protocol dissemination. Human Brain Mapping. DOI
• Uddin, M.N., Faiyaz, A., Wang, L., Zhuang, Y., Murray, K.D., Descoteaux, M., Tivarus, M.E., Weber, M.T., Zhong, J., Qiu, X., Schifitto, G. (2021). A longitudinal analysis of brain extracellular free water in HIV infected individuals. Scientific Reports. DOI
• Osorio, I., Guevara, M., Bonometti, D., Carrasco, D., Descoteaux, M., Poupon, C., Mangin, J.-F., Hernández, C., Guevara, P. (2021). ABrainVis: an android brain image visualization tool. Biomedical Engineering Online. DOI
• Cohen-Adad, J., Alonso-Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R.L., Barth, M., Battiston, M., Büchel, C., Budde, M., Callot, V., Combes, A.J.E., De Leener, B., Descoteaux, M., de Sousa, P.L., Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Author Correction: Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers (Scientific Data, (2021), 8, 1, (219), 10.1038/s41597-021-00941-8). Scientific Data. DOI
• Binette, A.P., Theaud, G., Rheault, F., Roy, M., Collins, D.L., Levin, J., Mori, H., Lee, J.H., Farlow, M.R., Schofield, P., Chhatwal, J.P., Masters, C.L., Benzinger, T., Morris, J., Bateman, R., Breitner, J.C.S., Poirier, J., Gonneaud, J., Descoteaux, M., Villeneuve, S. (2021). Bundle-specific associations between white matter microstructure and Ab and tau pathology in preclinical Alzheimer’s disease. Elife. DOI
• St-Onge, E., Al-Sharif, N., Girard, G., Theaud, G., Descoteaux, M. (2021). Cortical Surfaces Integration with Tractography for Structural Connectivity Analysis. Brain Connectivity. DOI
• Lefebvre, G., Guay, S., Chamard, E., Theaud, G., De Guise, E., Bacon, B.A., Descoteaux, M., De Beaumont, L., Théoret, H. (2021). Diffusion Tensor Imaging in Contact and Non-Contact University-Level Sport Athletes. Journal of Neurotrauma. DOI
• Legarreta, J.H., Petit, L., Rheault, F., Theaud, G., Lemaire, C., Descoteaux, M., Jodoin, P.-M. (2021). Filtering in tractography using autoencoders (FINTA). Medical Image Analysis. DOI
• Cohen-Adad, J., Alonso-Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R.L., Barth, M., Battiston, M., Büchel, C., Budde, M., Callot, V., Combes, A.J.E., De Leener, B., Descoteaux, M., de Sousa, P.L., Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Generic acquisition protocol for quantitative MRI of the spinal cord. Nature Protocols. DOI
• Ocampo-Pineda, M., Schiavi, S., Rheault, F., Girard, G., Petit, L., Descoteaux, M., Daducci, A. (2021). Hierarchical Microstructure Informed Tractography. Brain Connectivity. DOI
• Fortin, D., Iorio-Morin, C., Tellier, A., Goffaux, P., Descoteaux, M., Whittingstall, K. (2021). High-Grade Gliomas Located in the Right Hemisphere Are Associated With Worse Quality of Life. World Neurosurgery. DOI
• Cai, L.Y., Yang, Q., Kanakaraj, P., Nath, V., Newton, A.T., Edmonson, H.A., Luci, J., Conrad, B.N., Price, G.R., Hansen, C.B., Kerley, C.I., Ramadass, K., Yeh, F.-C., Kang, H., Garyfallidis, E., Descoteaux, M., Rheault, F., Schilling, K.G., Landman, B.A. (2021). MASiVar: Multisite, multiscanner, and multisubject acquisitions for studying variability in diffusion weighted MRI. Magnetic Resonance in Medicine. DOI
• Yeh, C.-H., Jones, D.K., Liang, X., Descoteaux, M., Connelly, A. (2021). Mapping Structural Connectivity Using Diffusion MRI: Challenges and Opportunities. Journal of Magnetic Resonance Imaging. DOI
• Beaudoin, A.-M., Rheault, F., Theaud, G., Laberge, F., Whittingstall, K., Lamontagne, A., Descoteaux, M. (2021). Modern Technology in Multi-Shell Diffusion MRI Reveals Diffuse White Matter Changes in Young Adults With Relapsing-Remitting Multiple Sclerosis. Frontiers in Neuroscience. DOI
• Cohen-Adad, J., Alonso-Ortiz, E., Abramovic, M., Arneitz, C., Atcheson, N., Barlow, L., Barry, R.L., Barth, M., Battiston, M., Büchel, C., Budde, M., Callot, V., Combes, A.J.E., De Leener, B., Descoteaux, M., de Sousa, P.L., Dostál, M., Doyon, J., Dvorak, A., ... Xu, J. (2021). Open-access quantitative MRI data of the spinal cord and reproducibility across participants, sites and manufacturers. Scientific Data. DOI
• Boyer, A., Stengel, C., Bonnetblanc, F., Dali, M., Duffau, H., Rheault, F., Descoteaux, M., Guiraud, D., Valero-Cabre, A., Mandonnet, E. (2021). Patterns of axono-cortical evoked potentials: an electrophysiological signature unique to each white matter functional site?. Acta Neurochirurgica. DOI
• Obaid, S., Rheault, F., Edde, M., Guberman, G.I., St-Onge, E., Sidhu, J., Bouthillier, A., Daducci, A., Ghaziri, J., Bojanowski, M.W., Nguyen, D.K., Descoteaux, M. (2021). Structural connectivity alterations in operculo-insular epilepsy. Brain Sciences. DOI
• Cole, M., Murray, K., St-Onge, E., Risk, B., Zhong, J., Schifitto, G., Descoteaux, M., Zhang, Z. (2021). Surface-Based Connectivity Integration: An atlas-free approach to jointly study functional and structural connectivity. Human Brain Mapping. DOI
• Perron, M., Theaud, G., Descoteaux, M., Tremblay, P. (2021). The frontotemporal organization of the arcuate fasciculus and its relationship with speech perception in young and older amateur singers and non-singers. Human Brain Mapping. DOI
• Théberge, A., Desrosiers, C., Descoteaux, M., Jodoin, P.-M. (2021). Track-to-Learn: A general framework for tractography with deep reinforcement learning. Medical Image Analysis. DOI
• Schilling, K.G., Rheault, F., Petit, L., Hansen, C.B., Nath, V., Yeh, F.-C., Girard, G., Barakovic, M., Rafael-Patino, J., Yu, T., Fischi-Gomez, E., Pizzolato, M., Ocampo-Pineda, M., Schiavi, S., Canales-Rodríguez, E.J., Daducci, A., Granziera, C., Innocenti, G., Thiran, J.-P., ... Descoteaux, M. (2021). Tractography dissection variability: What happens when 42 groups dissect 14 white matter bundles on the same dataset?. Neuroimage. DOI
• Schiavi, S., Ocampo-Pineda, M., Barakovic, M., Petit, L., Descoteaux, M., Thiran, J.-P., Daducci, A. (2020). A new method for accurate in vivo mapping of human brain connections using microstructural and anatomical information. Science Advances. DOI
• Pizzolato, M., Gilbert, G., Thiran, J.-P., Descoteaux, M., Deriche, R. (2020). Adaptive phase correction of diffusion-weighted images. Neuroimage. DOI
• Edde, M., Dilharreguy, B., Theaud, G., Chanraud, S., Helmer, C., Dartigues, J.-F., Amieva, H., Allard, M., Descoteaux, M., Catheline, G. (2020). Age-related change in episodic memory: role of functional and structural connectivity between the ventral posterior cingulate and the parietal cortex. Brain Structure and Function. DOI
• Schilling, K.G., Petit, L., Rheault, F., Remedios, S., Pierpaoli, C., Anderson, A.W., Landman, B.A., Descoteaux, M. (2020). Brain connections derived from diffusion MRI tractography can be highly anatomically accurate—if we know where white matter pathways start, where they end, and where they do not go. Brain Structure and Function. DOI
• Constanzo, J., Midavaine, É., Fouquet, J., Lepage, M., Descoteaux, M., Kirby, K., Tremblay, L., Masson-Côté, L., Geha, S., Longpré, J.-M., Paquette, B., Sarret, P. (2020). Brain irradiation leads to persistent neuroinflammation and long-term neurocognitive dysfunction in a region-specific manner. Progress in Neuro Psychopharmacology and Biological Psychiatry. DOI
• Baril, A.-A., Gagnon, K., Descoteaux, M., Bedetti, C., Chami, S., Sanchez, E., Montplaisir, J., De Beaumont, L., Gilbert, D., Poirier, J., Pelleieux, S., Osorio, R.S., Carrier, J., Gosselin, N. (2020). Cerebral white matter diffusion properties and free-water with obstructive sleep apnea severity in older adults. Human Brain Mapping. DOI
• Barbeau, E.B., Descoteaux, M., Petrides, M. (2020). Dissociating the white matter tracts connecting the temporo-parietal cortical region with frontal cortex using diffusion tractography. Scientific Reports. DOI
• Roy, M., Rheault, F., Croteau, E., Castellano, C.-A., Fortier, M., St-Pierre, V., Houde, J.-C., Turcotte, É.E., Bocti, C., Fulop, T., Cunnane, S.C., Descoteaux, M. (2020). Fascicle-and Glucose-Specific Deterioration in White Matter Energy Supply in Alzheimer's Disease. Journal of Alzheimer S Disease. DOI
• Edde, M., Theaud, G., Rheault, F., Dilharreguy, B., Helmer, C., Dartigues, J.-F., Amieva, H., Allard, M., Descoteaux, M., Catheline, G. (2020). Free water: A marker of age-related modifications of the cingulum white matter and its association with cognitive decline. Plos One. DOI
• Marcotte, K., Sanchez, E., Arbour, C., Brambati, S.M., Bedetti, C., Martineau, S., Descoteaux, M., Gosselin, N. (2020). Long-term discourse outcomes and their relationship to white matter damage in moderate to severe adulthood traumatic brain injury. Brain and Language. DOI
• Mandonnet, E., Vincent, M., Valero-Cabré, A., Facque, V., Barberis, M., Bonnetblanc, F., Rheault, F., Volle, E., Descoteaux, M., Margulies, D.S. (2020). Network-level causal analysis of set-shifting during trail making test part B: A multimodal analysis of a glioma surgery case. Cortex. DOI
• Butler, R., Mierzwinski, G.W., Bernier, P.M., Descoteaux, M., Gilbert, G., Whittingstall, K. (2020). Neurophysiological basis of contrast dependent BOLD orientation tuning. Neuroimage. DOI
• Girard, G., Caminiti, R., Battaglia-Mayer, A., St-Onge, E., Ambrosen, K.S., Eskildsen, S.F., Krug, K., Dyrby, T.B., Descoteaux, M., Thiran, J.-P., Innocenti, G.M. (2020). On the cortical connectivity in the macaque brain: A comparison of diffusion tractography and histological tracing data. Neuroimage. DOI
• Easson, K., Rohlicek, C.V., Houde, J.-C., Gilbert, G., Saint-Martin, C., Fontes, K., Majnemer, A., Marelli, A., Wintermark, P., Descoteaux, M., Brossard-Racine, M. (2020). Quantification of apparent axon density and orientation dispersion in the white matter of youth born with congenital heart disease. Neuroimage. DOI
• Sanchez, E., Arbour, C., El-Khatib, H., Marcotte, K., Blais, H., Baril, A.-A., Bedetti, C., Descoteaux, M., Lina, J.-M., Gilbert, D., Carrier, J., Gosselin, N. (2020). Sleep spindles are resilient to extensive white matter deterioration. Brain Communications. DOI
• Guberman, G.I., Houde, J.-C., Ptito, A., Gagnon, I., Descoteaux, M. (2020). Structural abnormalities in thalamo-prefrontal tracks revealed by high angular resolution diffusion imaging predict working memory scores in concussed children. Brain Structure and Function. DOI
• Vanderweyen, D.C., Theaud, G., Sidhu, J., Rheault, F., Sarubbo, S., Descoteaux, M., Fortin, D. (2020). The role of diffusion tractography in refining glial tumor resection. Brain Structure and Function. DOI
• Nolze-Charron, G., Dufort-Rouleau, R., Houde, J.-C., Dumont, M., Castellano, C.-A., Cunnane, S., Lorrain, D., Fülöp, T., Descoteaux, M., Bocti, C. (2020). Tractography of the external capsule and cognition: A diffusion MRI study of cholinergic fibers. Experimental Gerontology. DOI
• Nath, V., Schilling, K.G., Parvathaneni, P., Huo, Y., Blaber, J.A., Hainline, A.E., Barakovic, M., Romascano, D., Rafael-Patino, J., Frigo, M., Girard, G., Thiran, J.-P., Daducci, A., Rowe, M., Rodrigues, P., Prčkovska, V., Aydogan, D.B., Sun, W., Shi, Y., ... Landman, B.A. (2020). Tractography reproducibility challenge with empirical data (TraCED): The 2017 ISMRM diffusion study group challenge. Journal of Magnetic Resonance Imaging. DOI
• Rheault, F., De Benedictis, A., Daducci, A., Maffei, C., Tax, C.M.W., Romascano, D., Caverzasi, E., Morency, F.C., Corrivetti, F., Pestilli, F., Girard, G., Theaud, G., Zemmoura, I., Hau, J., Glavin, K., Jordan, K.M., Pomiecko, K., Chamberland, M., Barakovic, M., ... Descoteaux, M. (2020). Tractostorm: The what, why, and how of tractography dissection reproducibility. Human Brain Mapping. DOI
• Fortier, M., Castellano, C.-A., Croteau, E., Langlois, F., Bocti, C., St-Pierre, V., Vandenberghe, C., Bernier, M., Roy, M., Descoteaux, M., Whittingstall, K., Lepage, M., Turcotte, É.E., Fulop, T., Cunnane, S.C. (2019). A ketogenic drink improves brain energy and some measures of cognition in mild cognitive impairment. Alzheimer S and Dementia. DOI
• Maier-Hein, K.H., Neher, P.F., Houde, J.-C., Côté, M.-A., Garyfallidis, E., Zhong, J., Chamberland, M., Yeh, F.-C., Lin, Y.-C., Ji, Q., Reddick, W.E., Glass, J.O., Chen, D.Q., Feng, Y., Gao, C., Wu, Y., Ma, J., He, R., Li, Q., ... Descoteaux, M. (2019). Author Correction: The challenge of mapping the human connectome based on diffusion tractography (Nature Communications, (2017), 8, 1, (1349), 10.1038/s41467-017-01285-x). Nature Communications. DOI
• Sanchez, E., El-Khatib, H., Arbour, C., Bedetti, C., Blais, H., Marcotte, K., Baril, A.-A., Descoteaux, M., Gilbert, D., Carrier, J., Gosselin, N. (2019). Brain white matter damage and its association with neuronal synchrony during sleep. Brain. DOI
• Rheault, F., St-Onge, E., Sidhu, J., Maier-Hein, K., Tzourio-Mazoyer, N., Petit, L., Descoteaux, M. (2019). Bundle-specific tractography with incorporated anatomical and orientational priors. Neuroimage. DOI
• Schilling, K.G., Daducci, A., Maier-Hein, K., Poupon, C., Houde, J.-C., Nath, V., Anderson, A.W., Landman, B.A., Descoteaux, M. (2019). Challenges in diffusion MRI tractography – Lessons learned from international benchmark competitions. Magnetic Resonance Imaging. DOI
• Butler, R., Bernier, P.-M., Mierzwinski, G.W., Descoteaux, M., Gilbert, G., Whittingstall, K. (2019). Cortical distance, not cancellation, dominates inter-subject EEG gamma rhythm amplitude. Neuroimage. DOI
• Papadopoulou, A., Gaetano, L., Pfister, A., Altermatt, A., Tsagkas, C., Morency, F., Brandt, A.U., Hardmeier, M., Chakravarty, M.M., Descoteaux, M., Kappos, L., Sprenger, T., Magon, S. (2019). Damage of the lateral geniculate nucleus in MS: Assessing the missing node of the visual pathway. Neurology. DOI
• Jeurissen, B., Descoteaux, M., Mori, S., Leemans, A. (2019). Diffusion MRI fiber tractography of the brain. NMR in Biomedicine. DOI
• Corrivetti, F., de Schotten, M.T., Poisson, I., Froelich, S., Descoteaux, M., Rheault, F., Mandonnet, E. (2019). Dissociating motor–speech from lexico-semantic systems in the left frontal lobe: insight from a series of 17 awake intraoperative mappings in glioma patients. Brain Structure and Function. DOI
• Innocenti, G.M., Caminiti, R., Rouiller, E.M., Knott, G., Dyrby, T.B., Descoteaux, M., Thiran, J.-P. (2019). Diversity of Cortico-descending Projections: Histological and Diffusion MRI Characterization in the Monkey. Cerebral Cortex. DOI
• Dumont, M., Roy, M., Jodoin, P.-M., Morency, F.C., Houde, J.-C., Xie, Z., Bauer, C., Samad, T.A., Van Dijk, K.R.A., Goodman, J.A., Descoteaux, M. (2019). Free Water in White Matter Differentiates MCI and AD From Control Subjects. Frontiers in Aging Neuroscience. DOI
• Schilling, K.G., Nath, V., Hansen, C., Parvathaneni, P., Blaber, J., Gao, Y., Neher, P., Aydogan, D.B., Shi, Y., Ocampo-Pineda, M., Schiavi, S., Daducci, A., Girard, G., Barakovic, M., Rafael-Patino, J., Romascano, D., Rensonnet, G., Pizzolato, M., Bates, A., ... Landman, B.A. (2019). Limits to anatomical accuracy of diffusion tractography using modern approaches. Neuroimage. DOI
• Zhang, Z., Descoteaux, M., Dunson, D.B. (2019). Nonparametric Bayes Models of Fiber Curves Connecting Brain Regions. Journal of the American Statistical Association. DOI
• Duchesne, S., Dieumegarde, L., Chouinard, I., Farokhian, F., Badhwar, A., Bellec, P., Tétreault, P., Descoteaux, M., Boré, A., Houde, J.-C., Beaulieu, C., Potvin, O. (2019). Structural and functional multi-platform MRI series of a single human volunteer over more than fifteen years. Scientific Data. DOI
• Boukadi, M., Marcotte, K., Bedetti, C., Houde, J.-C., Desautels, A., Deslauriers-Gauthier, S., Chapleau, M., Boré, A., Descoteaux, M., Brambati, S.M. (2019). Test-retest reliability of diffusion measures extracted along white matter language fiber bundles using Hardi-based tractography. Frontiers in Neuroscience. DOI
• Potvin, O., Chouinard, I., Dieumegarde, L., Bartha, R., Bellec, P., Collins, D.L., Descoteaux, M., Hoge, R., Ramirez, J., Scott, C.J.M., Smith, E.E., Strother, S.C., Black, S.E., Duchesne, S. (2019). The Canadian Dementia Imaging Protocol: Harmonization validity for morphometry measurements. Neuroimage Clinical. DOI
• Duchesne, S., Chouinard, I., Potvin, O., Fonov, V.S., Khademi, A., Bartha, R., Bellec, P., Collins, D.L., Descoteaux, M., Hoge, R., McCreary, C.R., Ramirez, J., Scott, C.J.M., Smith, E.E., Strother, S.C., Black, S.E. (2019). The Canadian Dementia Imaging Protocol: Harmonizing National Cohorts. Journal of Magnetic Resonance Imaging. DOI
• Tremblay, P., Perron, M., Deschamps, I., Kennedy-Higgins, D., Houde, J.-C., Dick, A.S., Descoteaux, M. (2019). The role of the arcuate and middle longitudinal fasciculi in speech perception in noise in adulthood. Human Brain Mapping. DOI
• Innocenti, G.M., Dyrby, T.B., Girard, G., St-Onge, E., Thiran, J.-P., Daducci, A., Descoteaux, M. (2019). Topological principles and developmental algorithms might refine diffusion tractography. Brain Structure and Function. DOI
• Deslauriers-Gauthier, S., Lina, J.-M., Butler, R., Whittingstall, K., Gilbert, G., Bernier, P.-M., Deriche, R., Descoteaux, M. (2019). White matter information flow mapping from diffusion MRI and EEG. Neuroimage. DOI
• Obaid, S., Tucholka, A., Ghaziri, J., Jodoin, P.-M., Morency, F., Descoteaux, M., Bouthillier, A., Nguyen, D.K. (2018). Cortical thickness analysis in operculo-insular epilepsy. Neuroimage Clinical. DOI
• Constanzo, J., Dumont, M., Lebel, R., Tremblay, L., Whittingstall, K., Masson-Côté, L., Geha, S., Sarret, P., Lepage, M., Paquette, B., Descoteaux, M. (2018). Diffusion MRI monitoring of specific structures in the irradiated rat brain. Magnetic Resonance in Medicine. DOI
• Lefebvre, J., Delafontaine-Martel, P., Pouliot, P., Girouard, H., Descoteaux, M., Lesage, F. (2018). Fully automated dual-resolution serial optical coherence tomography aimed at diffusion MRI validation in whole mouse brains. Neurophotonics. DOI
• Descoteaux, M., Maier-Hein, L., Franz, A., Jannin, P., Collins, L.D., Duchesne, S. (2018). Guest editorial for the IJCARS special issue on MICCAI 2017. International Journal of Computer Assisted Radiology and Surgery. DOI
• Tounekti, S., Troalen, T., Bihan-Poudec, Y., Froesel, M., Lamberton, F., Ozenne, V., Cléry, J., Richard, N., Descoteaux, M., Ben Hamed, S., Hiba, B. (2018). High-resolution 3D diffusion tensor MRI of anesthetized rhesus macaque brain at 3T. Neuroimage. DOI
• Najdenovska, E., Alemán-Gómez, Y., Battistella, G., Descoteaux, M., Hagmann, P., Jacquemont, S., Maeder, P., Thiran, J.-P., Fornari, E., Cuadra, M.B. (2018). In-vivo probabilistic atlas of human thalamic nuclei based on diffusion-weighted magnetic resonance imaging. Scientific Data. DOI
• Zhang, Z., Descoteaux, M., Zhang, J., Girard, G., Chamberland, M., Dunson, D., Srivastava, A., Zhu, H. (2018). Mapping population-based structural connectomes. Neuroimage. DOI
• Garyfallidis, E., Côté, M.-A., Rheault, F., Sidhu, J., Hau, J., Petit, L., Fortin, D., Cunanne, S., Descoteaux, M. (2018). Recognition of white matter bundles using local and global streamline-based registration and clustering. Neuroimage. DOI
• Descoteaux, M., Maier-Hein, L., Franz, A., Jannin, P., Collins, D.L., Duchesne, S. (2018). Special Issue on MICCAI 2017. Medical Image Analysis. DOI
• Bizeau, A., Gilbert, G., Bernier, M., Huynh, M.T., Bocti, C., Descoteaux, M., Whittingstall, K. (2018). Stimulus-evoked changes in cerebral vessel diameter: A study in healthy humans. Journal of Cerebral Blood Flow and Metabolism. DOI
• Ghaziri, J., Tucholka, A., Girard, G., Boucher, O., Houde, J.-C., Descoteaux, M., Obaid, S., Gilbert, G., Rouleau, I., Nguyen, D.K. (2018). Subcortical structural connectivity of insular subregions. Scientific Reports. DOI
• St-Onge, E., Daducci, A., Girard, G., Descoteaux, M. (2018). Surface-enhanced tractography (SET). Neuroimage. DOI
• Hanganu, A., Houde, J.-C., Fonov, V.S., Degroot, C., Mejia-Constain, B., Lafontaine, A.-L., Soland, V., Chouinard, S., Collins, L.D., Descoteaux, M., Monchi, O. (2018). White matter degeneration profile in the cognitive cortico-subcortical tracts in Parkinson's disease. Movement Disorders. DOI
• Chekir, A., Hassas, S., Descoteaux, M., Côté, M., Garyfallidis, E., Oulebsir-Boumghar, F. (2017). 3D-SSF: A bio-inspired approach for dynamic multi-subject clustering of white matter tracts. Computers in Biology and Medicine. DOI
• Cousineau, M., Jodoin, P.-M., Morency, F.C., Rozanski, V., Grand'Maison, M., Bedell, B.J., Descoteaux, M. (2017). A test-retest study on Parkinson's PPMI dataset yields statistically significant white matter fascicles. Neuroimage Clinical. DOI
• Chamberland, M., Scherrer, B., Prabhu, S.P., Madsen, J., Fortin, D., Whittingstall, K., Descoteaux, M., Warfield, S.K. (2017). Active delineation of Meyer’s loop using oriented priors through MAGNEtic tractography (MAGNET). Human Brain Mapping. DOI
• Butler, R., Gilbert, G., Descoteaux, M., Bernier, P.-M., Whittingstall, K. (2017). Application of polymer sensitive MRI sequence to localization of EEG electrodes. Journal of Neuroscience Methods. DOI
• Girard, G., Daducci, A., Petit, L., Thiran, J.-P., Whittingstall, K., Deriche, R., Wassermann, D., Descoteaux, M. (2017). AxTract: Toward microstructure informed tractography. Human Brain Mapping. DOI
• Ledoux, L.-P., Morency, F.C., Cousineau, M., Houde, J.-C., Whittingstall, K., Descoteaux, M. (2017). Fiberweb: Diffusion visualization and processing in the browser. Frontiers in Neuroinformatics. DOI
• Tricot, B., Descoteaux, M., Dumont, M., Chagnon, F., Tremblay, L., Carpentier, A., Lesur, O., Lepage, M., Lalande, A. (2017). Improving the evaluation of cardiac function in rats at 7T with denoising filters: A comparison study. BMC Medical Imaging. DOI
• Chamberland, M., Girard, G., Bernier, M., Fortin, D., Descoteaux, M., Whittingstall, K. (2017). On the Origin of Individual Functional Connectivity Variability: The Role of White Matter Architecture. Brain Connectivity. DOI
• Hau, J., Sarubbo, S., Houde, J.C., Corsini, F., Girard, G., Deledalle, C., Crivello, F., Zago, L., Mellet, E., Jobard, G., Joliot, M., Mazoyer, B., Tzourio-Mazoyer, N., Descoteaux, M., Petit, L. (2017). Revisiting the human uncinate fasciculus, its subcomponents and asymmetries with stem-based tractography and microdissection validation. Brain Structure and Function. DOI
• Ghaziri, J., Tucholka, A., Girard, G., Houde, J.-C., Boucher, O., Gilbert, G., Descoteaux, M., Lippé, S., Rainville, P., Nguyen, D.K. (2017). The Corticocortical Structural Connectivity of the Human Insula. Cerebral Cortex. DOI
• Maier-Hein, K.H., Neher, P.F., Houde, J.-C., Côté, M.-A., Garyfallidis, E., Zhong, J., Chamberland, M., Yeh, F.-C., Lin, Y.-C., Ji, Q., Reddick, W.E., Glass, J.O., Chen, D.Q., Feng, Y., Gao, C., Wu, Y., Ma, J., Renjie, H., Li, Q., ... Descoteaux, M. (2017). The challenge of mapping the human connectome based on diffusion tractography. Nature Communications. DOI
• Rozanski, V.E., da Silva, N.M., Ahmadi, S.-A., Mehrkens, J., da Silva Cunha, J., Houde, J.-C., Vollmar, C., Bötzel, K., Descoteaux, M. (2017). The role of the pallidothalamic fibre tracts in deep brain stimulation for dystonia: A diffusion MRI tractography study. Human Brain Mapping. DOI
• Rheault, F., Houde, J.-C., Descoteaux, M. (2017). Visualization, interaction and tractometry: Dealing with millions of streamlines from diffusion MRI tractography. Frontiers in Neuroinformatics. DOI
• Lefebvre, J., Castonguay, A., Pouliot, P., Descoteaux, M., Lesage, F. (2017). Whole mouse brain imaging using optical coherence tomography: Reconstruction, normalization, segmentation, and comparison with diffusion MRI. Neurophotonics. DOI
• Daducci, A., Palú, A.D., Descoteaux, M., Thiran, J.-P. (2016). Microstructure informed tractography: Pitfalls and open challenges. Frontiers in Neuroscience. DOI
• De Benedictis, A., Petit, L., Descoteaux, M., Marras, C.E., Barbareschi, M., Corsini, F., Dallabona, M., Chioffi, F., Sarubbo, S. (2016). New insights in the homotopic and heterotopic connectivity of the frontal portion of the human corpus callosum revealed by microdissection and diffusion tractography. Human Brain Mapping. DOI
• St-Jean, S., Coupé, P., Descoteaux, M. (2016). Non Local Spatial and Angular Matching: Enabling higher spatial resolution diffusion MRI datasets through adaptive denoising. Medical Image Analysis. DOI
• Ocegueda, O., Dalmau, O., Garyfallidis, E., Descoteaux, M., Rivera, M. (2016). On the computation of integrals over fixed-size rectangles of arbitrary dimension. Pattern Recognition Letters. DOI
• Paquette, M., Gilbert, G., Descoteaux, M. (2016). Optimal DSI reconstruction parameter recommendations: Better ODFs and better connectivity. Neuroimage. DOI
• Renauld, E., Descoteaux, M., Bernier, M., Garyfallidis, E., Whittingstall, K. (2016). Semi-automatic segmentation of optic radiations and LGN, and their relationship to EEG alpha waves. Plos One. DOI
• Deslauriers-Gauthier, S., Marziliano, P., Paquette, M., Descoteaux, M. (2016). The application of a new sampling theorem for non-bandlimited signals on the sphere: Improving the recovery of crossing fibers for low b-value acquisitions. Medical Image Analysis. DOI
• Chamberland, M., Bernier, M., Fortin, D., Whittingstall, K., Descoteaux, M. (2015). 3D interactive tractography-informed resting-state fMRI connectivity. Frontiers in Neuroscience. DOI
• Presseau, C., Jodoin, P.-M., Houde, J.-C., Descoteaux, M. (2015). A new compression format for fiber tracking datasets. Neuroimage. DOI
• Paquette, M., Merlet, S., Gilbert, G., Deriche, R., Descoteaux, M. (2015). Comparison of sampling strategies and sparsifying transforms to improve compressed sensing diffusion spectrum imaging. Magnetic Resonance in Medicine. DOI
• Garyfallidis, E., Ocegueda, O., Wassermann, D., Descoteaux, M. (2015). Robust and efficient linear registration of white-matter fascicles in the space of streamlines. Neuroimage. DOI
• Tax, C.M.W., Chamberland, M., Van Stralen, M., Viergever, M.A., Whittingstall, K., Fortin, D., Descoteaux, M., Leemans, A. (2015). Seeing more by showing less: Orientation-dependent transparency rendering for fiber tractography visualization. Plos One. DOI
• Ning, L., Laun, F., Gur, Y., DiBella, E.V.R., Deslauriers-Gauthier, S., Megherbi, T., Ghosh, A., Zucchelli, M., Menegaz, G., Fick, R., St-Jean, S., Paquette, M., Aranda, R., Descoteaux, M., Deriche, R., O'Donnell, L., Rathi, Y. (2015). Sparse Reconstruction Challenge for diffusion MRI: Validation on a physical phantom to determine which acquisition scheme and analysis method to use?. Medical Image Analysis. DOI
• Neher, P.F., Descoteaux, M., Houde, J.-C., Stieltjes, B., Maier-Hein, K.H. (2015). Strengths and weaknesses of state of the art fiber tractography pipelines - A comprehensive in-vivo and phantom evaluation study using Tractometer. Medical Image Analysis. DOI
• Brandão, P., Jovem, C., Brasil-Neto, J.P., Tomaz, C., Descoteaux, M., Allam, N. (2014). Congenital mirror movements: Lack of decussation of pyramids. Brain. DOI
• Gramfort, A., Poupon, C., Descoteaux, M. (2014). Denoising and fast diffusion imaging with physically constrained sparse dictionary learning. Medical Image Analysis. DOI
• Garyfallidis, E., Brett, M., Amirbekian, B., Rokem, A., van der Walt, S., Descoteaux, M., Nimmo-Smith, I. (2014). Dipy, a library for the analysis of diffusion MRI data. Frontiers in Neuroinformatics. DOI
• Daducci, A., Canales-Rodriguez, E.J., Descoteaux, M., Garyfallidis, E., Gur, Y., Lin, Y.-C., Mani, M., Merlet, S., Paquette, M., Ramirez-Manzanares, A., Reisert, M., Rodrigues, P.R., Sepehrband, F., Caruyer, E., Choupan, J., Deriche, R., Jacob, M., Menegaz, G., Prckovska, V., ... Thiran, J.-P. (2014). Quantitative comparison of reconstruction methods for intra-voxel fiber recovery from diffusion MRI. IEEE Transactions on Medical Imaging. DOI
• Chamberland, M., Whittingstall, K., Fortin, D., Mathieu, D., Descoteaux, M. (2014). Real-time multi-peak tractography for instantaneous connectivity display. Frontiers in Neuroinformatics. DOI
• Vigneau-Roy, N., Bernier, M., Descoteaux, M., Whittingstall, K. (2014). Regional variations in vascular density correlate with resting-state and task-evoked blood oxygen level-dependent signal amplitude. Human Brain Mapping. DOI
• Whittingstall, K., Bernier, M., Houde, J.-C., Fortin, D., Descoteaux, M. (2014). Structural network underlying visuospatial imagery in humans. Cortex. DOI
• Girard, G., Whittingstall, K., Deriche, R., Descoteaux, M. (2014). Towards quantitative connectivity analysis: Reducing tractography biases. Neuroimage. DOI
• Bernier, M., Chamberland, M., Houde, J.-C., Descoteaux, M., Whittingstall, K. (2014). Using fMRI non-local means denoising to uncover activation in sub-cortical structures at 1.5 T for guided HARDI tractography. Frontiers in Human Neuroscience. DOI
• Roy, M., Nugent, S., Tremblay, S., Descoteaux, M., Beaudoin, J.F., Tremblay, L., Lecomte, R., Cunnane, S.C. (2013). A dual tracer PET-MRI protocol for the quantitative measure of regional brain energy substrates uptake in the rat. Journal of Visualized Experiments Jove. DOI
• Coupé, P., Manjón, J.V., Chamberland, M., Descoteaux, M., Hiba, B. (2013). Collaborative patch-based super-resolution for diffusion-weighted images. Neuroimage. DOI
• Laforce Jr., R., Roy, M., Descoteaux, M., Berthelot, C., Bouchard, J.-P. (2013). Neurocognitive deficits and diffusion MR imaging abnormalities in a case of adult-onset autosomal dominant leukodystrophy. Translational Neuroscience. DOI
• Côté, M.-A., Girard, G., Boré, A., Garyfallidis, E., Houde, J.-C., Descoteaux, M. (2013). Tractometer: Towards validation of tractography pipelines. Medical Image Analysis. DOI
• Roy, M., Nugent, S., Tremblay-Mercier, J., Tremblay, S., Courchesne-Loyer, A., Beaudoin, J.-F., Tremblay, L., Descoteaux, M., Lecomte, R., Cunnane, S.C. (2012). The ketogenic diet increases brain glucose and ketone uptake in aged rats: A dual tracer PET and volumetric MRI study. Brain Research. DOI
• Fortin, D., Aubin-Lemay, C., Boré, A., Girard, G., Houde, J.-C., Whittingstall, K., Descoteaux, M. (2012). Tractography in the study of the human brain: A neurosurgical perspective. Canadian Journal of Neurological Sciences. DOI
• Sharman, M.A., Cohen-Adad, J., Descoteaux, M., Messé, A., Benali, H., Lehericy, S. (2011). Impact of outliers on diffusion tensor and Q-ball imaging: Clinical implications and correction strategies. Journal of Magnetic Resonance Imaging. DOI
• Descoteaux, M., Deriche, R., Le Bihan, D., Mangin, J.-F., Poupon, C. (2011). Multiple q-shell diffusion propagator imaging. Medical Image Analysis. DOI
• Cohen-Adad, J., Descoteaux, M., Wald, L.L. (2011). Quality assessment of high angular resolution diffusion imaging data using bootstrap on Q-ball reconstruction. Journal of Magnetic Resonance Imaging. DOI
• Fillard, P., Descoteaux, M., Goh, A., Gouttard, S., Jeurissen, B., Malcolm, J., Ramirez-Manzanares, A., Reisert, M., Sakaie, K., Tensaouti, F., Yo, T., Mangin, J.-F., Poupon, C. (2011). Quantitative evaluation of 10 tractography algorithms on a realistic diffusion MR phantom. Neuroimage. DOI
• Guevara, P., Poupon, C., Rivière, D., Cointepas, Y., Descoteaux, M., Thirion, B., Mangin, J.-F. (2011). Robust clustering of massive tractography datasets. Neuroimage. DOI
• Kezele, I., Descoteaux, M., Poupon, C., Poupon, F., Mangin, J.-F. (2010). Spherical wavelet transform for ODF sharpening. Medical Image Analysis. DOI
• Descoteaux, M., Deriche, R., Knösche, T.R., Anwander, A. (2009). Deterministic and probabilistic tractography based on complex fibre orientation distributions. IEEE Transactions on Medical Imaging. DOI
• Delmaire, C., Vidailhet, M., Wassermann, D., Descoteaux, M., Valabregue, R., Bourdain, F., Lenglet, C., Sangla, S., Terrier, A., Deriche, R., Lehéricy, S. (2009). Diffusion abnormalities in the primary sensorimotor pathways in writer's cramp. Archives of Neurology. DOI
• Descoteaux, M., Deriche, R., Le Bihan, D., Mangin, J.F., Poupon, C. (2009). Diffusion propagator imaging: using Laplace's equation and multiple shell acquisitions to reconstruct the diffusion propagator. Information Processing in Medical Imaging Proceedings of the Conference.
• Descoteaux, M., Deriche, R. (2009). High angular resolution diffusion MRI segmentation using region-based statistical surface evolution. Journal of Mathematical Imaging and Vision. DOI
• Lenglet, C., Campbell, J.S., Descoteaux, M., Haro, G., Savadjiev, P., Wassermann, D., Anwander, A., Deriche, R., Pike, G.B., Sapiro, G., Siddiqi, K., Thompson, P.M. (2009). Mathematical methods for diffusion MRI processing. Neuroimage. DOI
• Deriche, R., Calder, J., Descoteaux, M. (2009). Optimal real-time Q-ball imaging using regularized Kalman filtering with incremental orientation sets. Medical Image Analysis. DOI
• Descoteaux, M., Collins, D.L., Siddiqi, K. (2008). A geometric flow for segmenting vasculature in proton-density weighted MRI. Medical Image Analysis. DOI
• Cohen-Adad, J., Descoteaux, M., Rossignol, S., Hoge, R.D., Deriche, R., Benali, H. (2008). Detection of multiple pathways in the spinal cord using q-ball imaging. Neuroimage. DOI
• Wassermann, D., Descoteaux, M., Deriche, R. (2008). Diffusion maps clustering for magnetic resonance Q-ball imaging segmentation. International Journal of Biomedical Imaging. DOI
• Savadjiev, P., Campbell, J.S.W., Descoteaux, M., Deriche, R., Pike, G.B., Siddiqi, K. (2008). Labeling of ambiguous subvoxel fibre bundle configurations in high angular resolution diffusion MRI. Neuroimage. DOI
• Descoteaux, M., Angelino, E., Fitzgibbons, S., Deriche, R. (2007). Regularized, fast, and robust analytical Q-ball imaging. Magnetic Resonance in Medicine. DOI
• Reinertsen, I., Descoteaux, M., Siddiqi, K., Collins, D.L. (2007). Validation of vessel-based registration for correction of brain shift. Medical Image Analysis. DOI
• Descoteaux, M., Angelino, E., Fitzgibbons, S., Deriche, R. (2006). Apparent diffusion coefficients from high angular resolution diffusion imaging: Estimation and applications. Magnetic Resonance in Medicine. DOI

Livres

• Dell'Acqua, F., Descoteaux, M., Leemans, A. (2024). Handbook of Diffusion MR Tractography: Imaging Methods, Biophysical Models, Algorithms and Applications. Handbook of Diffusion MR Tractography Imaging Methods Biophysical Models Algorithms and Applications. DOI
• Dell'Acqua, F., Descoteaux, M., Leemans, A. (2024). Preface. Handbook of Diffusion MR Tractography Imaging Methods Biophysical Models Algorithms and Applications. DOI
• Prčkovska, V., Andorrà, M., Villoslada, P., Martinez-Heras, E., Duits, R., Fortin, D., Rodrigues, P., Descoteaux, M. (2015). Contextual diffusion image post-processing aids clinical applications. Mathematics and Visualization. DOI
• Vaillancourt, O., Chamberland, M., Houde, J.-C., Descoteaux, M. (2015). Visualization of diffusion propagator and multiple parameter diffusion signal. Mathematics and Visualization. DOI
• Descoteaux, M., Collins, L., Siddiqi, K. (2004). A Multi-scale Geometric Flow for Segmenting Vasculature in MRI. Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics. DOI

Chapitres de livre

• Rheault, F., Poulin, P., Caron, A.V., St-Onge, E., Schilling, K.G., Petit, L., Dell’Acqua, F., Leemans, A., Descoteaux, M. (2024). Current challenges and opportunities for tractography. Handbook of Diffusion MR Tractography Imaging Methods Biophysical Models Algorithms and Applications. DOI
• Leemans, A., Dell’Acqua, F., Descoteaux, M. (2024). Deterministic fiber tractography. Handbook of Diffusion MR Tractography Imaging Methods Biophysical Models Algorithms and Applications. DOI
• Stones, R., Descoteaux, M., Dell’Acqua, F. (2024). From diffusion models to fiber orientations. Handbook of Diffusion MR Tractography Imaging Methods Biophysical Models Algorithms and Applications. DOI
• St-Onge, E., Girard, G., Schilling, K.G., Daducci, A., Deslauriers-Gauthier, S., Petit, L., Descoteaux, M. (2024). Improving tractography using anatomical priors and multimodal integration. Handbook of Diffusion MR Tractography Imaging Methods Biophysical Models Algorithms and Applications. DOI
• Chamberland, M., St-Jean, S., Jones, D.K., Descoteaux, M., Leemans, A. (2024). Methods and statistics for diffusion MRI tractometry. Handbook of Diffusion MR Tractography Imaging Methods Biophysical Models Algorithms and Applications. DOI
• Girard, G., Aydogan, D.B., Dell’Acqua, F., Leemans, A., Descoteaux, M., Sotiropoulos, S.N. (2024). Probabilistic tractography. Handbook of Diffusion MR Tractography Imaging Methods Biophysical Models Algorithms and Applications. DOI
• Dell’Acqua, F., Leemans, A., Dawson, M., Descoteaux, M. (2024). Single-shell diffusion models: From DTI to HARDI. Handbook of Diffusion MR Tractography Imaging Methods Biophysical Models Algorithms and Applications. DOI
• Antoine Théberge, Maxime Descoteaux, Pierre-Marc Jodoin. (2024). TractOracle: Towards an Anatomically-Informed Reward Function for RL-Based Tractography. DOI
• Theaud, G., Edde, M., Leemans, A., Dell’Acqua, F., Yang, J.Y.-M., Descoteaux, M. (2024). Tractography in pathological anatomy: Some general considerations. Handbook of Diffusion MR Tractography Imaging Methods Biophysical Models Algorithms and Applications. DOI
• Pizzolato, M., Palombo, M., Bonet-Carne, E., Tax, C.M.W., Grussu, F., Ianus, A., Bogusz, F., Pieciak, T., Ning, L., Larochelle, H., Descoteaux, M., Chamberland, M., Blumberg, S.B., Mertzanidou, T., Alexander, D.C., Afzali, M., Aja-Fernández, S., Jones, D.K., Westin, C.-F., ... Hutter, J. (2020). Acquiring and Predicting Multidimensional Diffusion (MUDI) Data: An Open Challenge. Mathematics and Visualization. DOI
• Descoteaux, M., Deriche, R. (2015). From local q-ball estimation to fibre crossing tractography. Handbook of Biomedical Imaging Methodologies and Clinical Research. DOI

Articles de conférence

• Hernandez-Gutierrez, E., Coronado-Leija, R., Ramirez-Manzanares, A., Barakovic, M., Magon, S., Descoteaux, M. (2023). Improving Multi-Tensor Fitting with Global Information from Track Orientation Density Imaging. Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics. DOI
• Legarreta, J.H., Petit, L., Jodoin, P.-M., Descoteaux, M. (2022). Clustering in Tractography Using Autoencoders (CINTA). Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics. DOI
• Poirier, C., Descoteaux, M., Gilet, G. (2021). Accelerating Geometry-Based Spherical Harmonics Glyphs Rendering for dMRI Using Modern OpenGL. Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics. DOI
• Jörgens, D., Descoteaux, M., Moreno, R. (2021). Challenges for Tractogram Filtering. Mathematics and Visualization. DOI
• Battocchio, M., Schiavi, S., Descoteaux, M., Daducci, A. (2021). Improving Tractography Accuracy Using Dynamic Filtering. Mathematics and Visualization. DOI
• Lefebvre, J., Delafontaine-Martel, P., Lemieux, P., Descoteaux, M., Petit, L., Lesage, F. (2021). Localization and imaging of white matter fiber crossings in whole mouse brains using diffusion MRI and serial blockface OCT. Progress in Biomedical Optics and Imaging Proceedings of SPIE. DOI
• Rheault, F., Poulin, P., Valcourt Caron, A., St-Onge, E., Descoteaux, M. (2020). Common misconceptions, hidden biases and modern challenges of dMRI tractography. Journal of Neural Engineering. DOI
• Essemlali, A., St-Onge, E., Descoteaux, M., Jodoin, P.-M. (2020). Understanding Alzheimer disease’s structural connectivity through explainable AI. Proceedings of Machine Learning Research.
• Zucchelli, M., Descoteaux, M., Menegaz, G. (2018). A generalized smt-based framework for diffusion mri microstructural model estimation. Mathematics and Visualization. DOI
• Rheault, F., St-Onge, E., Sidhu, J., Chenot, Q., Petit, L., Descoteaux, M. (2018). Bundle-specific tractography. Mathematics and Visualization. DOI
• Deslauriers-Gauthier, S., Parker, D., Rheault, F., Deriche, R., Brem, S., Descoteaux, M., Verma, R. (2018). Edema-informed anatomically constrained particle filter tractography. Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics. DOI
• Deslauriers-Gauthier, S., Lina, J.-M., Butler, R., Bernier, P.-M., Whittingstall, K., Deriche, R., Descoteaux, M. (2017). Inference and visualization of information flow in the visual pathway using dMRI and EEG. Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics. DOI
• Chamberland, M., Gray, W., Descoteaux, M., Jones, D.K. (2017). Interactive computation and visualization of structural connectomes in real-time. Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics. DOI
• Poulin, P., Côté, M.-A., Houde, J.-C., Petit, L., Neher, P.F., Maier-Hein, K.H., Larochelle, H., Descoteaux, M. (2017). Learn to track: Deep learning for tractography. Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics. DOI
• Girard, G., Fick, R., Descoteaux, M., Deriche, R., Wassermann, D. (2015). AxTract: Microstructure-driven tractography based on the ensemble average propagator. Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics. DOI
• Fick, R.H.J., Zucchelli, M., Girard, G., Descoteaux, M., Menegaz, G., Deriche, R. (2015). Using 3D-SHORE and MAP-MRI to obtain both tractography and microstructural constrast from a clinical DMRI acquisition. Proceedings International Symposium on Biomedical Imaging. DOI
• Chekir, A., Descoteaux, M., Garyfallidis, E., Cote, M.-A., Boumghar, F.O. (2014). A hybrid approach for optimal automatic segmentation of White Matter tracts in HARDI. Iecbes 2014 Conference Proceedings 2014 IEEE Conference on Biomedical Engineering and Sciences Miri Where Engineering in Medicine and Biology and Humanity Meet. DOI
• Prčkovska, V., Descoteaux, M., Poupon, C., Ter Haar Romeny, B.M., Vilanova, A. (2012). Classification study of DTI and HARDI anisotropy measures for HARDI data simplification. Mathematics and Visualization. DOI
• Giot, R., Charrier, C., Descoteaux, M. (2012). Local water diffusion phenomenon clustering from high angular resolution diffusion imaging (HARDI). Proceedings International Conference on Pattern Recognition.
• Gramfort, A., Poupon, C., Descoteaux, M. (2012). Sparse DSI: Learning DSI structure for denoising and fast imaging. Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics. DOI
• Merlet, S., Philippe, A.-C., Deriche, R., Descoteaux, M. (2012). Tractography via the ensemble average propagator in diffusion MRI. Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics. DOI
• Côté, M.-A., Boré, A., Girard, G., Houde, J.-C., Descoteaux, M. (2012). Tractometer: Online evaluation system for tractography. Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics. DOI
• Guevara, P., Poupon, C., Rivière, D., Cointepas, Y., Marrakchi, L., Descoteaux, M., Fillard, P., Thirion, B., Mangin, J.-F. (2010). Inference of a HARDI fiber bundle atlas using a two-level clustering strategy. Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics. DOI
• Péchaud, M., Descoteaux, M., Keriven, R. (2009). Brain connectivity using geodesics in HARDI. Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics. DOI
• Descoteaux, M., Deriche, R., Le Bihan, D., Mangin, J.-F., Poupon, C. (2009). Diffusion propagator imaging: Using laplace's equation and multiple shell acquisitions to reconstruct the diffusion propagator. Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics. DOI
• Yo, T.-S., Anwander, A., Descoteaux, M., Fillard, P., Poupon, C., Knösche, T.R. (2009). Quantifying brain connectivity: A comparative tractography study. Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics. DOI
• Cohen-Adad, J., Descoteaux, M., Rossignol, S., Hoge, R.D., Deriche, R., Benali, H. (2008). Detection of multiple pathways in the spinal cord white matter using Q-ball imaging. 2008 5th IEEE International Symposium on Biomedical Imaging from Nano to Macro Proceedings Isbi. DOI
• Descoteaux, M., Wiest-Daesslé, N., Prima, S., Barillot, C., Deriche, R. (2008). Impact of Rician adapted non-local means filtering on HARDI. Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics. DOI
• Ghosh, A., Descoteaux, M., Deriche, R. (2008). Riemannian framework for estimating symmetric positive definite 4th order diffusion tensors. Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics. DOI
• Wassermann, D., Descoteaux, M., Deriche, R. (2007). Diffusion maps segmentation of magnetic resonance Q-ball imaging. Proceedings of the IEEE International Conference on Computer Vision. DOI
• Descoteaux, M., Lenglet, C., Deriche, R. (2007). Diffusion tensor sharpening improves white matter tractography. Progress in Biomedical Optics and Imaging Proceedings of SPIE. DOI
• Deriche, R., Descoteaux, M. (2007). SPlitting tracking through crossing fibers: Multidirectional Q-Ball tracking. 2007 4th IEEE International Symposium on Biomedical Imaging from Nano to Macro Proceedings. DOI
• Descoteaux, M., Deriche, R. (2007). Segmentation of Q-ball images using statistical surface evolution. Lecture Notes in Computer Science Including Subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics. DOI
• Descoteaux, M., Savadjiev, P., Campbell, J., Pike, G.B., Siddiqi, K., Deriche, R. (2007). Validation and comparison of analytical Q-ball imaging methods. 2007 4th IEEE International Symposium on Biomedical Imaging from Nano to Macro Proceedings. DOI
• Descoteaux, M., Angelina, E., Fitzgibbons, S., Deriche, R. (2006). A fast and robust ODF estimation algorithm in Q-ball imaging. 2006 3rd IEEE International Symposium on Biomedical Imaging from Nano to Macro Proceedings.
• Descoteaux, M., Angelino, E., Fitzgibbons, S., Deriche, R. (2006). Apparent diffusion profile estimation from high angular resolution diffusion images. Progress in Biomedical Optics and Imaging Proceedings of SPIE. DOI
• Descoteaux, M., Audette, M., Chinzei, K., Siddiqi, K. (2006). Bone enhancement filtering: Application to sinus bone segmentation and simulation of pituitary surgery. Computer Aided Surgery. DOI
• Descoteaux, M., Collins, L., Siddiqi, K. (2004). Geometric flows for segmenting vasculature in MRI: Theory and validation. Lecture Notes in Computer Science. DOI
• Reinertsen, I., Descoteaux, M., Drouin, S., Siddiqi, K., Collins, D.L. (2004). Vessel driven correction of brain shift. Lecture Notes in Computer Science. DOI

Autres contributions

Cours enseignés à l'UdeS

• IFT784 - Projet d'intégration et de recherche. (2026). (3CR).
• IMN259 - Analyse d'images. (2026). (3CR).
• IMN359 - Outils mathématiques du traitement d'images. (2023-2025). (3CR).
• IMN530 - Reconstruction et analyse d’images médicales. (2024-2025). (3CR).
• IMN708 - Reconstruction et analyse d'images médicales. (2024-2025). (3CR).

Divers

• Hernandez-Gutierrez, E., Coronado-Leija, R., Edde, M., Rheault, F., Dumont, M., Houde, J.-C., Barakovic, M., Magon, S., Ramirez-Manzanares, A., Descoteaux, M. (2025). Longitudinal Visualization Tools for Advanced Characterization of Multiple Sclerosis Lesions Using Diffusion MRI and Magnetization Transfer Imaging Metrics. Research Square.
• Villeneuve, S., Poirier, J., Breitner, J.C.S., Tremblay-Mercier, J., Remz, J., Raoult, J.-M., Yakoub, Y., Gallego-Rudolf, J., Qiu, T., Valdez, A.F., Mohammediyan, B., Javanray, M., Metz, A., Sanami, S., Ourry, V., Wearn, A., Pastor-Bernier, A., Edde, M., Gonneaud, J., ... Binette, A.P. (2025). The PREVENT-AD cohort: accelerating Alzheimer’s disease research and treatment in Canada and beyond. Medrxiv.
• Schilling, K.G., Newton, A., Tax, C., Nilsson, M., Chamberland, M., Anderson, A., Landman, B., Descoteaux, M. (2025). White matter geometry confounds Diffusion Tensor Imaging Along Perivascular Space (DTI-ALPS) measures. Biorxiv.
• Labounek, R., Bondy, M.T., Paulson, A.L., Bédard, S., Abramovic, M., Alonso-Ortiz, E., Atcheson, N.T., Barlow, L.R., Barry, R.L., Barth, M., Battiston, M., Büchel, C., Budde, M.D., Callot, V., Combes, A., De Leener, B., Descoteaux, M., de Sousa, P.L., Dostál, M., ... Nestrašil, I. (2024). Body size interacts with the structure of the central nervous system: A multi-center in vivo neuroimaging study. Biorxiv.
• Théberge, A., Descoteaux, M., Jodoin, P.-M. (2024). TRACTORACLE: TOWARDS AN ANATOMICALLY-INFORMED REWARD FUNCTION FOR RL-BASED TRACTOGRAPHY. Arxiv.
• Karan, P., Edde, M., Gilbert, G., Barakovic, M., Magon, S., Descoteaux, M. (2023). Data-driven characterization and correction of the orientation dependence of magnetization transfer measures using diffusion MRI. Biorxiv.
• Nozais, V., Theaud, G., Descoteaux, M., Schotten, M.T., Petit, L. (2023). Improved Functionnectome by dissociating the contributions of white matter fiber classes to functional activation. Research Square.
• Jörgens, D., Jodoin, P.-M., Descoteaux, M., Moreno, R. (2023). MERGING MULTIPLE INPUT DESCRIPTORS AND SUPERVISORS IN A DEEP NEURAL NETWORK FOR TRACTOGRAM FILTERING. Arxiv.
• Little, G., Poirier, C., Parent, M., Petit, L., Descoteaux, M. (2023). Mapping caudolenticular gray matter bridges in the human brain striatum through diffusion magnetic resonance imaging and tractography. Biorxiv.
• Renauld, E., Théberge, A., Petit, L., Houde, J.-C., Descoteaux, M. (2023). Validate your white matter tractography algorithms with a reappraised ISMRM 2015 Tractography Challenge scoring system. Research Square.
• Théberge, A., Desrosiers, C., Descoteaux, M., Jodoin, P.-M. (2023). WHAT MATTERS IN REINFORCEMENT LEARNING FOR TRACTOGRAPHY. Arxiv.
• Bautin, P., Fortier, M.-A., Sean, M., Little, G., Martel, M., Descoteaux, M., Léonard, G., Tétreault, P. (2023). What has brain diffusion MRI taught us about chronic pain: a narrative review. Medrxiv.
• Poirier, C., Descoteaux, M. (2022). A Unified Filtering Method for Estimating Asymmetric Orientation Distribution Functions: Where and How Asymmetry Occurs in the Brain. Biorxiv.
• Jelescu, I.O., Grussu, F., Ianus, A., Hansen, B., Barrett, R.L.C., Aggarwal, M., Michielse, S., Nasrallah, F., Syeda, W., Wang, N., Veraart, J., Roebroeck, A., Bagdasarian, A.F., Eichner, C., Sepehrband, F., Zimmermann, J., Soustelle, L., Bowman, C., Tendler, B.C., ... Schilling, K.G. (2022). Considerations and Recommendations from the ISMRM Diffusion Study Group for preclinical diffusion MRI: Part 1 — In vivo small-animal imaging. Arxiv.
• Legarreta, J.H., Petit, L., Jodoin, P.-M., Descoteaux, M. (2022). GENERATIVE SAMPLING IN BUNDLE TRACTOGRAPHY USING AUTOENCODERS (GESTA). Arxiv.
• Edde, M., Theaud, G., Dumont, M., Théberge, A., Valcourt-Caron, A., Gilbert, G., Houde, J.-C., Maltais, L., Rheault, F., Spagnolo, F., Barakovic, M., Magon, S., Descoteaux, M. (2022). High-frequency longitudinal white matter diffusion- & myelin-based MRI database: reliability and variability. Biorxiv.
• Rheault, F., Schilling, K.G., Obaid, S., Begnoche, J., Cutting, L.E., Descoteaux, M., Landman, B.A., Petit, L. (2022). The Influence of Regions of Interest on Tractography Virtual Dissection Protocols: General Principles to Learn and to Follow. Research Square.
• Gaudreault, P.-O., Lina, J.-M., Descoteaux, M., Gosselin, N., Doyon, J., Deslauriers-Gauthier, S., Carrier, J. (2022). The length of the thalamo-cortical white matter fibers brings insight into sex differences in sleep spindle frequency. Biorxiv.
• Roy, M., Fortier, M., Rheault, F., Edde, M., Croteau, E., Castellano, C.-A., Langlois, F., St-Pierre, V., Cuenoud, B., Bocti, C., Fulop, T., Descoteaux, M., Cunnane, S.C. (2021). A ketogenic supplement improves white matter energy supply and processing speed in mild cognitive impairment. Medrxiv.
• Karan, P., Reymbaut, A., Gilbert, G., Descoteaux, M. (2021). Enabling Constrained Spherical Deconvolution and Diffusional Variance Decomposition with Tensor-Valued Diffusion MRI. Biorxiv.
• Guberman, G.I., Stojanovski, S., Nishat, E., Ptito, A., Bzdok, D., Wheeler, A., Descoteaux, M. (2021). Multi-tract multi-symptom relationships in pediatric concussion. Medrxiv.
• Schilling, K.G., Tax, C.M.W., Rheault, F., Landman, B., Anderson, A., Descoteaux, M., Petit, L. (2021). Prevalence of white matter pathways coming into a single diffusion MRI voxel orientation: The bottleneck issue in tractography. Biorxiv.
• Nagano-Saito, A., Houde, J.-C., Bedetti, C., Descoteaux, M., Leyton, M., Benkelfat, C., Monchi, O. (2021). Reorganisation of diffusion microstructure in the precuneus is associated with preserved cognitive function in Parkinson’s disease. Research Square.
• Poulin, P., Theaud, G., Rheault, F., St-Onge, E., Bore, A., Renauld, E., de Beaumont, L., Guay, S., Jodoin, P.-M., Descoteaux, M. (2021). TractoInferno: A large-scale, open-source, multi-site database for machine learning dMRI tractography. Biorxiv.
• Caron, A.V., Shmuel, A., Hao, Z., Descoteaux, M. (2021). mrHARDIflow: A pipeline tailored for the preprocessing and analysis of Multi-Resolution High Angular diffusion MRI and its application to a variability study of the PRIME-DE database. Biorxiv.
• Binette, A.P., Theaud, G., Rheault, F., Roy, M., Collins, D.L., Breitner, J.C.S., Poirier, J., Descoteaux, M., Villeneuve, S. (2020). Bundle-specific associations between white matter microstructure and Aβ and tau pathology at their connecting cortical endpoints in older adults at risk of alzheimer's disease. Biorxiv.
• Uddin, M.N., Faiyaz, A., Wang, L., Zhuang, Y., Murray, K.D., Descoteaux, M., Tivarus, M.E., Weber, M.T., Zhong, J., Qiu, X., Schifitto, G. (2020). Linking Neuroinflammation and Extracellular Free Water in HIV Infection: A Longitudinal Study. Research Square.
• Cai, L.Y., Yang, Q., Kanakaraj, P., Nath, V., Newton, A.T., Edmonson, H.A., Luci, J., Conrad, B.N., Price, G.R., Hansen, C.B., Kerley, C.I., Ramadass, K., Yeh, F.-C., Kang, H., Garyfallidis, E., Descoteaux, M., Rheault, F., Schilling, K.G., Landman, B.A. (2020). MASiVar: Multisite, Multiscanner, and Multisubject Acquisitions for Studying Variability in Diffusion Weighted Magnetic Resonance Imaging. Biorxiv.
• Reymbaut, A., Caron, A.V., Gilbert, G., Szczepankiewicz, F., Nilsson, M., Warfield, S.K., Descoteaux, M., Scherrer, B. (2020). Magic DIAMOND: Multi-fascicle diffusion compartment imaging with tensor distribution modeling and tensor-valued diffusion encoding. Arxiv.
• Hansen, C.B., Yang, Q., Lyu, I., Rheault, F., Kerley, C., Chandio, B.Q., Fadnavis, S., Williams, O., Shafer, A.T., Resnick, S.M., Zald, D.H., Cutting, L., Taylor, W.D., Boyd, B., Garyfallidis, E., Anderson, A.W., Descoteaux, M., Landman, B.A., Schilling, K.G. (2020). Pandora: 4-D white matter bundle population-based atlases derived from diffusion MRI fiber tractography. Biorxiv.
• Al-Sharif, N.B., St-Onge, E., Theaud, G., Evans, A.C., Descoteaux, M. (2020). Processing the diffusion-weighted magnetic resonance imaging of the PING dataset. Biorxiv.
• Cole, M., Murray, K., St-Onge, E., Risk, B., Zhong, J., Schifitto, G., Descoteaux, M., Zhang, Z. (2020). Surface-Based Connectivity Integration. Biorxiv.
• Theaud, G., Houde, J.-C., Boré, A., Rheault, F., Morency, F., Descoteaux, M. (2020). TractoFlow-ABS (Atlas-Based Segmentation). Biorxiv.
• Reymbaut, A., Descoteaux, M. (2019). Advanced encoding methods in diffusion MRI. Arxiv.
• Chamberland, M., Raven, E.P., Genc, S., Duffy, K., Descoteaux, M., Parker, G.D., Tax, C.M.W., Jones, D.K. (2019). Dimensionality Reduction of Diffusion MRI Measures for Improved Tractometry of the Human Brain. Biorxiv.
• Edde, M., Theaud, G., Rheault, F., Dilharreguy, B., Helmer, C., Dartigues, J.-F., Amieva, H., Allard, M., Descoteaux, M., Catheline, G. (2019). Free water: A sensitive metric for age-related modifications of the cingulum white matter and its association with cognition. Biorxiv.
• Schiavi, S., Barakovic, M., Ocampo-Pineda, M., Descoteaux, M., Thiran, J.-P., Daducci, A. (2019). Reducing false positives in tractography with microstructural and anatomical priors. Biorxiv.
• Theaud, G., Houde, J.-C., Boré, A., Rheault, F., Morency, F., Descoteaux, M. (2019). TractoFlow: A robust, efficient and reproducible diffusion MRI pipeline leveraging Nextflow & Singularity. Biorxiv.
• Poulin, P., Jörgens, D., Jodoin, P.-M., Descoteaux, M. (2019). Tractography and machine learning: Current state and open challenges. Arxiv.
• Rheault, F., De Benedictis, A., Daducci, A., Maffei, C., Tax, C.M.W., Romascano, D., Caverzasi, E., Morency, F.C., Corrivetti, F., Pestilli, F., Girard, G., Theaud, G., Zemmoura, I., Hau, J., Glavin, K., Jordan, K.M., Pomiecko, K., Chamberland, M., Barakovic, M., ... Descoteaux, M. (2019). Tractostorm: Rater reproducibility assessment in tractography dissection of the pyramidal tract. Biorxiv.
• Chenot, Q., Tzourio-mazoyer, N., Rheault, F., Descoteaux, M., Crivello, F., Zago, L., Mellet, E., Jobard, G., Joliot, M., Mazoyer, B., Petit, L. (2018). A population-based atlas of the human pyramidal tract in 410 healthy participants. Biorxiv.
• Rheault, F., Roy, M., Cunnane, S., Descoteaux, M. (2018). Bundle-specific fornix reconstruction for dual-tracer PET-tractometry. Biorxiv.
• Neher, P.F., Côté, M.-A., Houde, J.-C., Descoteaux, M., Maier-Hein, K.H. (2017). Fiber tractography using machine learning. Biorxiv.
• Zucchelli, M., Descoteaux, M., Menegaz, G. (2017). NODDI-SH: a computational efficient NODDI extension for fODF estimation in diffusion MRI. Arxiv.