Rodrigue, Sébastien

Professeur, Faculté des sciences
FAC. SCIENCES Biologie

Coordonnées

Courriel


819-821-8000, poste 62939

Diplômes

(2010) Post-doctorat (Stage postdoctoral). Massachusetts Institute of Technology.

(2006) Maîtrise avec mémoire (Maîtrise en biologie - Maîtrise). Université de Sherbrooke.

(2006) Doctorat (Doctorat en biologie). Université de Sherbrooke.

(2001) Baccalauréat (Baccalauréat en Biologie (B. Sc)). Université de Sherbrooke.

Présentation

Sujets de recherche

Chromosome (Organismes vivants), Mécanismes biologiques et biochimiques, Génotype et phénotype, Micro-organismes, Bioinformatique.

Disciplines de recherche

Biologie et autres sciences connexes.

Mots-clés

biologie des systèmes, biologie synthétique, génétique microbienne, génie génétique, génomique de cellules individuelles, métagénomique, séquençage de génomes.

Intérêts de recherche

Nouvelles technologies pour la biologie des systèmes, la biologie synthétique et la génomique de cellules individuelles.

Centre de recherche

Aucun

Langues parlées et écrites

Anglais, Français

Publications

Articles de revue

  • Carraro N* , Matteau D* , Luo P, Rodrigue S, Burrus V. (2014). The Master Activator of IncA/C Conjugative Plasmids Stimulates Genomic Islands and Multidrug Resistance Dissemination. PLoS Genetics, 10(10), e1004714. (Article publié).
  • Brunelle M* , Nordell-Markovits A* , Rodrigue S , Lupien M , Jacques PE , Gévry N. (2014). The histone variant H2A.Z is an important regulator of enhancer activity. eLife, 1-45. (Article soumis).
  • Poulin-Laprade D* , Matteau D* , Jacques PE , Rodrigue S , Burrus V. (2014). Transfer Activation of SXT/R391 Integrative and Conjugative Elements: Unraveling the SetCD Regulon. mBio, 1-12. (Révisions requises).
  • Kashtan N , Roggensack SE , Rodrigue S , Thompson JW , Biller SJ , Coe A , Ding H , Marttinen P , Malmstrom RR , Stocker R , Follows MJ , Stepanauskas R , Chisholm SW. (2014). Single-cell genomics reveals hundreds of coexisting subpopulations in wild Prochlorococcus. Science (New York, N.Y.), 344(6182), 416-20. (Article publié).
  • Grenier F* , Matteau D* , Baby V* , Rodrigue S. (2014). Complete Genome Sequence of Escherichia coli BW25113. Genome announcements, 2(5), e01038-14. (Article publié).
  • Carraro N* , Sauvé M* , Matteau D* , Lauzon G* , Rodrigue S , Burrus V. (2014). Development of pVCR94ΔX from Vibrio cholerae, a prototype for studying multidrug resistant IncA/C conjugative plasmids. Frontiers in microbiology, 5(44), 1-13. (Article publié).
  • Zitouni M* , Fortin M , Scheerle RK , Letzel T , Matteau D* , Rodrigue S , Brzezinski R. (2013). Biochemical and molecular characterization of a thermostable chitosanase produced by the strain Paenibacillus sp. 1794 newly isolated from compost. Applied microbiology and biotechnology, 97(13), 5801-13. (Article publié).
  • Daccord A* , Ceccarelli D* , Rodrigue S , Burrus V. (2013). Comparative analysis of mobilizable genomic islands. Journal of bacteriology, 195(3), 606-14. (Article publié).
  • Baby V* , Matteau D* , Knight TF , Rodrigue S. (2013). Complete Genome Sequence of the Mesoplasma florum W37 Strain. Genome announcements, 1(6), e00879-13. (Article publié).
  • Malmstrom RR , Rodrigue S , Huang KH , Kelly L , Kern SE* , Thompson A* , Roggensack S , Berube PM , Henn MR , Chisholm SW. (2013). Ecology of uncultured Prochlorococcus clades revealed through single-cell genomics and biogeographic analysis. The ISME journal, 7(1), 184-98. (Article publié).
  • Waldbauer JR , Rodrigue S , Coleman ML , Chisholm SW. (2012). Transcriptome and proteome dynamics of a light-dark synchronized bacterial cell cycle. PloS one, 7(8), e43432. (Article publié).
  • Rodrigue S , Materna AC , Timberlake SC , Blackburn MC , Malmstrom RR , Alm EJ , Chisholm SW. (2010). Unlocking short read sequencing for metagenomics. PloS one, 5(7), e11840. (Article publié).
  • Wu S , Barnes PF , Samten B , Pang X , Rodrigue S , Ghanny S , Soteropoulos P , Gaudreau L , Howard ST. (2009). Activation of the eis gene in a W-Beijing strain of Mycobacterium tuberculosis correlates with increased SigA levels and enhanced intracellular growth. Microbiology (Reading, England), 155(4), 1272-81. (Article publié).
  • Rodrigue S , Malmstrom RR , Berlin AM , Birren BW , Henn MR , Chisholm SW. (2009). Whole genome amplification and de novo assembly of single bacterial cells. PloS one, 4(9), e6864. (Article publié).
  • Donà V* , Rodrigue S* , Dainese E , Palù G , Gaudreau L , Manganelli R , Provvedi R. (2008). Evidence of complex transcriptional, translational, and posttranslational regulation of the extracytoplasmic function sigma factor sigmaE in Mycobacterium tuberculosis. Journal of bacteriology, 190(17), 5963-71. (Article publié).
  • Kettler GC , Martiny AC , Huang K , Zucker J , Coleman ML , Rodrigue S , Chen F , Lapidus A , Ferriera S , Johnson J , Steglich C , Church GM , Richardson P , Chisholm SW. (2007). Patterns and implications of gene gain and loss in the evolution of Prochlorococcus. PLoS genetics, 3(12),
  • Sureka K , Dey S , Datta P , Singh AK , Dasgupta A , Rodrigue S , Basu J , Kundu M. (2007). Polyphosphate kinase is involved in stress-induced mprAB-sigE-rel signalling in mycobacteria. Molecular microbiology, 65(2),
  • Rodrigue S , Brodeur J , Jacques PE , Gervais AL , Brzezinski R , Gaudreau L. (2007). Identification of mycobacterial sigma factor binding sites by chromatin immunoprecipitation assays. Journal of bacteriology, 189(5),
  • Rodrigue S , Provvedi R , Jacques PE , Gaudreau L , Manganelli R. (2006). The sigma factors of Mycobacterium tuberculosis. FEMS microbiology reviews, 30(6),
  • Dainese E , Rodrigue S , Delogu G , Provvedi R , Laflamme L , Brzezinski R , Fadda G , Smith I , Gaudreau L , Palù G , Manganelli R. (2006). Posttranslational regulation of Mycobacterium tuberculosis extracytoplasmic-function sigma factor sigma L and roles in virulence and in global regulation of gene expression. Infection and immunity, 74(4),
  • Jacques JF , Rodrigue S , Brzezinski R , Gaudreau L. (2006). A recombinant Mycobacterium tuberculosis in vitro transcription system. FEMS microbiology letters, 255(1),
  • Jacques PE , Rodrigue S , Gaudreau L , Goulet J , Brzezinski R. (2006). Detection of prokaryotic promoters from the genomic distribution of hexanucleotide pairs. BMC bioinformatics, 7,
  • Manganelli R , Provvedi R , Rodrigue S , Beaucher J , Gaudreau L , Smith I , Proveddi R. (2004). Sigma factors and global gene regulation in Mycobacterium tuberculosis. Journal of bacteriology, 186(4),

Chapitres de livre

  • Matteau D*, Rodrigue S. (2014). Identification of transcription start sites by genome-wide 5’-Rapid Amplification of cDNA Ends (5’-RACE). Methods in Molecular Biology (4, 1-18). Springer. (Article accepté).
  • Bianco S*, Rodrigue S, Murphy BD, Gévry N. (2014). Global mapping of open chromatin regulatory elements by formaldehyde-assisted isolation of regulatory elements followed by sequencing (FAIRE-seq). Methods in Molecular Biology (4, 1-17). Springer. (Article accepté).
  • Matteau D*, Rodrigue S. (2014). Precise Identification of DNA-Binding Proteins Genomic Location by Exonuclease Coupled Chromatin Immunoprecipitation (ChIP-exo). Methods in Molecular Biology (4, 1-24). Springer. (Article accepté).